Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KCV09_RS10470 Genome accession   NZ_CP073241
Coordinates   2272562..2272888 (-) Length   108 a.a.
NCBI ID   WP_004932341.1    Uniprot ID   A0A0M1I6N5
Organism   Acinetobacter soli strain M3-1-68     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2267562..2277888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS10450 - 2267730..2268392 (-) 663 WP_212515769.1 FHA domain-containing protein -
  KCV09_RS10455 gspD 2268462..2270765 (-) 2304 WP_212515109.1 type II secretion system secretin GspD -
  KCV09_RS10460 - 2270806..2271657 (-) 852 WP_004932348.1 type II secretion system protein N -
  KCV09_RS10465 gspN 2271657..2272400 (-) 744 WP_212515110.1 type II secretion system protein N -
  KCV09_RS10470 hns 2272562..2272888 (-) 327 WP_004932341.1 H-NS family nucleoid-associated regulatory protein Regulator
  KCV09_RS10475 - 2273093..2273533 (-) 441 WP_151814939.1 thioesterase family protein -
  KCV09_RS10480 - 2273542..2274735 (-) 1194 WP_151814940.1 heme biosynthesis protein HemY -
  KCV09_RS10485 - 2274747..2275577 (-) 831 WP_004932334.1 hypothetical protein -
  KCV09_RS10490 - 2275589..2276356 (-) 768 WP_151814941.1 uroporphyrinogen-III synthase -
  KCV09_RS10495 hemC 2276359..2277282 (-) 924 WP_104125256.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12410.04 Da        Isoelectric Point: 5.3410

>NTDB_id=558400 KCV09_RS10470 WP_004932341.1 2272562..2272888(-) (hns) [Acinetobacter soli strain M3-1-68]
MKPDISELSVEDLKRLQAEAEQLIASKKDQAIEDAYNQILEVAESVGYSVEQLLEYGAQKRKKTTRKSVEPRYRSKSNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=558400 KCV09_RS10470 WP_004932341.1 2272562..2272888(-) (hns) [Acinetobacter soli strain M3-1-68]
ATGAAACCAGATATTAGCGAATTATCCGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAGCAACTTATTGCCTCTAA
AAAAGATCAAGCAATTGAAGATGCGTATAACCAAATTTTAGAAGTTGCTGAAAGCGTGGGGTATAGCGTTGAGCAGTTAC
TTGAATACGGCGCACAAAAACGTAAGAAAACAACACGTAAATCTGTAGAGCCACGCTATCGCAGCAAGAGCAATCCAGAA
GAAACGTGGACTGGTCGTGGTAAACAACCGCGCTGGTTAGTCGCTGAGCTTGAAAAAGGTGCAAAATTAGAAGATTTCCT
TATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I6N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889