Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   L3X25_RS06285 Genome accession   NZ_CP091310
Coordinates   1214766..1215146 (-) Length   126 a.a.
NCBI ID   WP_002792200.1    Uniprot ID   -
Organism   Campylobacter coli strain M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1209766..1220146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X25_RS06260 (L3X25_06260) aspS 1210278..1212029 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  L3X25_RS06265 (L3X25_06265) - 1212026..1212601 (+) 576 WP_002781658.1 adenylate kinase -
  L3X25_RS06270 (L3X25_06270) ppa 1212612..1213130 (+) 519 WP_002776378.1 inorganic diphosphatase -
  L3X25_RS06275 (L3X25_06275) msrA 1213178..1213678 (+) 501 WP_224308006.1 peptide-methionine (S)-S-oxide reductase MsrA -
  L3X25_RS06280 (L3X25_06280) - 1213901..1214776 (-) 876 WP_002825343.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  L3X25_RS06285 (L3X25_06285) dprB 1214766..1215146 (-) 381 WP_002792200.1 Holliday junction resolvase RuvX Machinery gene
  L3X25_RS06290 (L3X25_06290) dprA 1215143..1215913 (-) 771 WP_224308005.1 DNA-processing protein DprA Machinery gene
  L3X25_RS06295 (L3X25_06295) - 1215903..1216934 (-) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  L3X25_RS06300 (L3X25_06300) ilvC 1216937..1217959 (-) 1023 WP_002806714.1 ketol-acid reductoisomerase -
  L3X25_RS06305 (L3X25_06305) - 1218082..1220016 (+) 1935 WP_002822670.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13922.31 Da        Isoelectric Point: 8.9633

>NTDB_id=558360 L3X25_RS06285 WP_002792200.1 1214766..1215146(-) (dprB) [Campylobacter coli strain M8]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRTNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=558360 L3X25_RS06285 WP_002792200.1 1214766..1215146(-) (dprB) [Campylobacter coli strain M8]
ATGAGAGCTTTGGCTTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATCGATAAAATCGCCATTCCTTTAGA
GGGTATAATCAGAACAAATCGCAATCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCCAAAGGAGGTTCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421