Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GHH_RS12120 Genome accession   NC_020210
Coordinates   2467133..2468854 (-) Length   573 a.a.
NCBI ID   WP_015375369.1    Uniprot ID   L8A0F1
Organism   Geobacillus sp. GHH01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2462133..2473854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHH_RS12100 (GHH_c24580) - 2462896..2463144 (+) 249 WP_015375366.1 DUF2627 domain-containing protein -
  GHH_RS12105 (GHH_c24590) - 2463220..2463948 (-) 729 WP_015375367.1 glycerophosphodiester phosphodiesterase -
  GHH_RS18400 (GHH_c24600) - 2464057..2464209 (+) 153 WP_011231868.1 YycC family protein -
  GHH_RS12110 (GHH_c24610) spo0A 2464361..2465179 (-) 819 WP_025038882.1 sporulation transcription factor Spo0A -
  GHH_RS12115 (GHH_c24620) spoIVB 2465564..2466859 (-) 1296 WP_015375368.1 SpoIVB peptidase -
  GHH_RS12120 (GHH_c24630) recN 2467133..2468854 (-) 1722 WP_015375369.1 DNA repair protein RecN Machinery gene
  GHH_RS12125 (GHH_c24640) ahrC 2468981..2469430 (-) 450 WP_011231872.1 transcriptional regulator AhrC/ArgR -
  GHH_RS12130 (GHH_c24650) - 2469487..2470335 (-) 849 WP_015375370.1 TlyA family RNA methyltransferase -
  GHH_RS12135 (GHH_c24660) dxs 2470339..2472231 (-) 1893 WP_015375371.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GHH_RS12140 (GHH_c24670) - 2472479..2473372 (-) 894 WP_012820586.1 polyprenyl synthetase family protein -
  GHH_RS12145 (GHH_c24680) - 2473376..2473606 (-) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64264.48 Da        Isoelectric Point: 4.9242

>NTDB_id=55836 GHH_RS12120 WP_015375369.1 2467133..2468854(-) (recN) [Geobacillus sp. GHH01]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYHIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=55836 GHH_RS12120 WP_015375369.1 2467133..2468854(-) (recN) [Geobacillus sp. GHH01]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTCGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCATGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGTGAAATCGAGCAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGTTATGAGGCCCTCTCCGGA
GAGGGACGCGGACTTGATTCGATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGTCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AGTACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTATGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTTACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCAGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCCCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGACGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCGATGGCGGAAAAAATTTACCACATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L8A0F1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.847

100

0.62

Multiple sequence alignment