Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   L3X25_RS03205 Genome accession   NZ_CP091310
Coordinates   614865..615170 (+) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain M8     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609865..620170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X25_RS03180 (L3X25_03180) rpsR 610224..610484 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  L3X25_RS03185 (L3X25_03185) lon 610540..612915 (-) 2376 WP_002783351.1 endopeptidase La -
  L3X25_RS03190 (L3X25_03190) bamD 612931..613578 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  L3X25_RS03195 (L3X25_03195) fliW 613742..614131 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  L3X25_RS03200 (L3X25_03200) proC 614131..614868 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  L3X25_RS03205 (L3X25_03205) ctsT 614865..615170 (+) 306 WP_002790525.1 hypothetical protein Machinery gene
  L3X25_RS03210 (L3X25_03210) - 615163..615831 (+) 669 WP_002780245.1 hypothetical protein -
  L3X25_RS03215 (L3X25_03215) - 615828..616280 (+) 453 WP_057040204.1 hypothetical protein -
  L3X25_RS03220 (L3X25_03220) - 616273..616902 (-) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  L3X25_RS03225 (L3X25_03225) thiE 616880..617512 (-) 633 WP_002783359.1 thiamine phosphate synthase -
  L3X25_RS03230 (L3X25_03230) thiD 617502..618314 (-) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L3X25_RS03235 (L3X25_03235) - 618314..618997 (-) 684 WP_002777124.1 3-methyladenine DNA glycosylase -
  L3X25_RS03240 (L3X25_03240) - 618994..619755 (-) 762 WP_072212081.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=558332 L3X25_RS03205 WP_002790525.1 614865..615170(+) (ctsT) [Campylobacter coli strain M8]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=558332 L3X25_RS03205 WP_002790525.1 614865..615170(+) (ctsT) [Campylobacter coli strain M8]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475