Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NCGM1984_RS09400 Genome accession   NZ_AP014646
Coordinates   2000965..2001294 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NCGM1984     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1995965..2006294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCGM1984_RS09385 (NCGM1984_1888) - 1996694..1997638 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  NCGM1984_RS09390 (NCGM1984_1889) - 1997739..1998764 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  NCGM1984_RS09395 (NCGM1984_1890) - 1998777..2000774 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  NCGM1984_RS09400 (NCGM1984_1891) comEA/comE1 2000965..2001294 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  NCGM1984_RS09410 (NCGM1984_1893) - 2001511..2002707 (-) 1197 WP_003091428.1 amino acid aminotransferase -
  NCGM1984_RS09415 (NCGM1984_1894) uvrB 2002895..2004907 (+) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=55832 NCGM1984_RS09400 WP_003091430.1 2000965..2001294(+) (comEA/comE1) [Pseudomonas aeruginosa strain NCGM1984]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=55832 NCGM1984_RS09400 WP_003091430.1 2000965..2001294(+) (comEA/comE1) [Pseudomonas aeruginosa strain NCGM1984]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385