Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GHH_RS06970 Genome accession   NC_020210
Coordinates   1410322..1411269 (+) Length   315 a.a.
NCBI ID   WP_015374604.1    Uniprot ID   L7ZYX2
Organism   Geobacillus sp. GHH01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405322..1416269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHH_RS06955 (GHH_c14050) - 1406677..1407966 (+) 1290 WP_015374601.1 CitMHS family transporter -
  GHH_RS06960 (GHH_c14060) - 1408010..1409320 (+) 1311 WP_015374602.1 acyclic terpene utilization AtuA family protein -
  GHH_RS06965 (GHH_c14070) - 1409326..1409649 (+) 324 WP_015374603.1 hypothetical protein -
  GHH_RS06970 (GHH_c14080) ceuB 1410322..1411269 (+) 948 WP_015374604.1 ABC transporter permease Machinery gene
  GHH_RS06975 (GHH_c14090) - 1411262..1412212 (+) 951 WP_015374605.1 iron chelate uptake ABC transporter family permease subunit -
  GHH_RS06980 (GHH_c14100) - 1412206..1412961 (+) 756 WP_015374606.1 ABC transporter ATP-binding protein -
  GHH_RS06985 (GHH_c14110) - 1413630..1414589 (+) 960 WP_015374607.1 siderophore ABC transporter substrate-binding protein -
  GHH_RS06990 (GHH_c14120) - 1414628..1415314 (-) 687 WP_015374608.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34572.48 Da        Isoelectric Point: 9.4681

>NTDB_id=55831 GHH_RS06970 WP_015374604.1 1410322..1411269(+) (ceuB) [Geobacillus sp. GHH01]
MKKWMVLLVVLAAASLFVGVHDLSPRELFAGDREAWEVFLISRLPRLISILIAGSSVSICGLIMQQLSQNRFVSPTTAGT
MDWARLGLLVSMIAFAAAGPLVKAAIAVVFAFVGTLLFMTVLDRVKYKDSIFIPLIGLMFGNIVGSVTTFLAYKYDLIQS
MSAWMHGDFSVMMQGRYEMLYVSVPLMAIAYVYANRFTIAGMGEEMATNLGVRYRSIVYTGLLIVAVVSAVEVLTVGTLP
FLGLIVPNIVTMYYGDHLRKVLPLTAIFGALFVLICDVFGRVAIYPYEIPIGLTVGVIGSGAFLYLLVRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=55831 GHH_RS06970 WP_015374604.1 1410322..1411269(+) (ceuB) [Geobacillus sp. GHH01]
ATGAAAAAATGGATGGTGCTTCTTGTTGTTTTGGCTGCGGCATCATTGTTTGTCGGTGTGCATGATTTATCGCCTCGCGA
GCTGTTTGCCGGCGACCGTGAGGCGTGGGAAGTGTTTTTGATCAGTCGCTTGCCGCGGCTTATCAGCATTCTGATCGCTG
GGTCAAGCGTGAGCATTTGCGGCTTGATCATGCAGCAGTTGAGCCAAAACCGATTTGTGTCGCCGACGACGGCGGGAACG
ATGGATTGGGCGCGGCTCGGCCTGTTGGTGTCCATGATTGCATTCGCTGCCGCAGGGCCGCTTGTGAAGGCGGCTATTGC
CGTTGTGTTTGCGTTTGTCGGGACGTTGCTGTTTATGACGGTTTTAGATCGTGTGAAGTATAAAGATTCGATCTTTATTC
CGCTCATCGGCTTGATGTTTGGCAATATTGTCGGTTCTGTCACGACGTTTTTGGCTTATAAATATGATTTGATTCAATCG
ATGTCCGCATGGATGCACGGCGATTTTTCCGTTATGATGCAAGGACGTTATGAAATGCTGTATGTGAGCGTTCCGCTCAT
GGCAATCGCTTATGTATACGCCAATCGGTTTACGATCGCCGGCATGGGGGAGGAGATGGCGACGAACTTAGGGGTTCGCT
ACCGTTCGATTGTCTACACTGGTCTCCTCATTGTCGCTGTTGTTTCTGCTGTTGAGGTGTTGACGGTTGGGACGCTGCCG
TTTTTAGGGCTGATCGTTCCGAACATCGTCACGATGTATTATGGGGATCATTTGCGCAAAGTATTGCCGTTGACAGCCAT
ATTTGGCGCTTTGTTTGTGCTGATTTGCGATGTATTTGGCCGAGTCGCCATTTATCCATACGAAATTCCGATCGGCTTGA
CGGTTGGAGTAATCGGAAGCGGCGCCTTTTTATATTTGCTCGTAAGGAGAACGAAGCAGTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L7ZYX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.408

99.683

0.483

Multiple sequence alignment