Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   L2M54_RS15360 Genome accession   NZ_CP091173
Coordinates   3201875..3202237 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain AB5116     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3196875..3207237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2M54_RS15350 (L2M54_15350) - 3199153..3201231 (-) 2079 WP_000505934.1 methyl-accepting chemotaxis protein -
  L2M54_RS15355 (L2M54_15355) - 3201278..3201814 (-) 537 WP_000729759.1 chemotaxis protein CheW -
  L2M54_RS15360 (L2M54_15360) pilH 3201875..3202237 (-) 363 WP_000101096.1 response regulator Machinery gene
  L2M54_RS15365 (L2M54_15365) pilG 3202261..3202644 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  L2M54_RS15370 (L2M54_15370) - 3202927..3203565 (+) 639 WP_002027721.1 hypothetical protein -
  L2M54_RS15375 (L2M54_15375) - 3203625..3204743 (+) 1119 WP_001260815.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=558302 L2M54_RS15360 WP_000101096.1 3201875..3202237(-) (pilH) [Acinetobacter baumannii strain AB5116]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=558302 L2M54_RS15360 WP_000101096.1 3201875..3202237(-) (pilH) [Acinetobacter baumannii strain AB5116]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
TGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392