Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L2M54_RS08720 Genome accession   NZ_CP091173
Coordinates   1784761..1785396 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain AB5116     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779761..1790396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2M54_RS08695 (L2M54_08695) - 1780601..1781614 (+) 1014 WP_005111009.1 phosphotransferase -
  L2M54_RS08700 (L2M54_08700) murU 1781614..1782303 (+) 690 WP_005111008.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  L2M54_RS08705 (L2M54_08705) rsmG 1782391..1783023 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  L2M54_RS08710 (L2M54_08710) - 1783045..1783827 (+) 783 WP_000057212.1 ParA family protein -
  L2M54_RS08715 (L2M54_08715) - 1783824..1784711 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  L2M54_RS08720 (L2M54_08720) exbB 1784761..1785396 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L2M54_RS08725 (L2M54_08725) - 1785412..1785840 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  L2M54_RS08730 (L2M54_08730) msbA 1785837..1787564 (+) 1728 WP_005128798.1 lipid A export permease/ATP-binding protein MsbA -
  L2M54_RS08735 (L2M54_08735) lpxK 1787567..1788577 (+) 1011 WP_005128796.1 tetraacyldisaccharide 4'-kinase -
  L2M54_RS08740 (L2M54_08740) kdsB 1788587..1789348 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2M54_RS08745 (L2M54_08745) - 1789360..1790340 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=558284 L2M54_RS08720 WP_000264037.1 1784761..1785396(+) (exbB) [Acinetobacter baumannii strain AB5116]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=558284 L2M54_RS08720 WP_000264037.1 1784761..1785396(+) (exbB) [Acinetobacter baumannii strain AB5116]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393