Detailed information NTG0055827

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NCGM1984_RS06930
• Genome accession: NZ_AP014646
• Coordinates: 1464641..1465645 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCGM1984
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1459641..1470645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCGM1984_RS06900 (NCGM1984_1392)	fghA	1459733..1460584 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
NCGM1984_RS06905 (NCGM1984_1393)	ispF	1460655..1461128 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NCGM1984_RS06910 (NCGM1984_1394)	truD	1461125..1462192 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
NCGM1984_RS06915 (NCGM1984_1395)	surE	1462180..1462929 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
NCGM1984_RS06920 (NCGM1984_1396)	-	1462962..1463597 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NCGM1984_RS06925 (NCGM1984_1397)	-	1463643..1464536 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
NCGM1984_RS06930 (NCGM1984_1398)	rpoS	1464641..1465645 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
NCGM1984_RS06935 (NCGM1984_1399)	fdxA	1466072..1466395 (-)	324	WP_003092272.1	ferredoxin FdxA	-
NCGM1984_RS06940 (NCGM1984_1400)	mutS	1466462..1469029 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
NCGM1984_RS06945 (NCGM1984_1401)	-	1469155..1470162 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=55827 NCGM1984_RS06930 WP_003113871.1 1464641..1465645(+) (rpoS) [Pseudomonas aeruginosa strain NCGM1984]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=55827 NCGM1984_RS06930 WP_003113871.1 1464641..1465645(+) (rpoS) [Pseudomonas aeruginosa strain NCGM1984]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653