Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KCG51_RS08200 Genome accession   NZ_CP073119
Coordinates   1719647..1721872 (-) Length   741 a.a.
NCBI ID   WP_254342374.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1714647..1726872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS08185 (KCG51_08195) - 1714855..1715451 (-) 597 WP_250580494.1 DNA glycosylase -
  KCG51_RS08190 (KCG51_08200) - 1715488..1716108 (-) 621 WP_250580496.1 phosphoribosylanthranilate isomerase -
  KCG51_RS08195 - 1716211..1719330 (-) 3120 WP_250580497.1 Mbeg1-like protein -
  KCG51_RS08200 (KCG51_08220) comA 1719647..1721872 (-) 2226 WP_254342374.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KCG51_RS08215 (KCG51_08235) - 1722321..1723712 (+) 1392 WP_219088780.1 3'-5' exonuclease family protein -
  KCG51_RS08220 (KCG51_08240) - 1723910..1724701 (+) 792 WP_219088783.1 Cof-type HAD-IIB family hydrolase -
  KCG51_RS08225 (KCG51_08245) - 1724769..1724975 (-) 207 WP_004521104.1 DUF2788 domain-containing protein -
  KCG51_RS08230 (KCG51_08250) metZ 1725064..1726233 (-) 1170 WP_254342376.1 O-succinylhomoserine sulfhydrylase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80952.51 Da        Isoelectric Point: 9.8395

>NTDB_id=558174 KCG51_RS08200 WP_254342374.1 1719647..1721872(-) (comA) [Neisseria subflava strain HP0069]
MAWQFVLPAWVVGVVLSFALPFVPPWWAWLSVIIGALALCRRFAVAWLVLAVCVGMVFGVWRTGLVLAGQWPVGEATAKV
LTVEVADMPRDDGRRVQFAARAWDEQGQAFDLMLSDYQRRDWAVGSRWSVSARVKPVIGEVNVRGLNRETWALVNGIDGM
GTLGRDRKLVRQGGGFGLANMRDAVSRSWQRTANKYPEFSDGIGLMRALSIGEQSALRPPLWQAFRPLGLTHLVSISGLH
VTMVSVLFAWLVKRIFRYLPWIPAKPRVWILAGGVAGALFYALLAGFSVPTQRSVLMLVAFAWAWWRGSGGSGWMVWWQA
LAVVLLLDPSAVLGVGTWLSFGLVAALIWASSGRLKESGWRLAVRGQWAATVLSVVLLGYLFASLPLLSPLVNALAIPWF
SWVLTPLALLGSVFPFELVQLVAAFLAEYTLRGLVWLATVSPEFAVAAAPVPVLVLAMMAALLLLLPKGMGLKPWACLVL
LGFVFYRPAKLEEGVARVTVMDAGQGLSVLIQTRNRNLLFDTGTEQVAQTGIVPSLNAMGVRRLDSLILSHHDIDHDGGF
QSVAAVGADKLLAGQPEFYPNAEFCQEDKWQWDGVDFELLRPSESVGKEDNDQSCVLRVVANGKALLITGDLGVKGEAGL
IEKYDNALYSQVLVLGHHGSSTASSGSFLHTVSPQYAVASSGYANAYKHPTVAVQNRVRAHGITLLRTDLSGALVFALGQ
GDIFQGRLKKDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=558174 KCG51_RS08200 WP_254342374.1 1719647..1721872(-) (comA) [Neisseria subflava strain HP0069]
ATGGCGTGGCAGTTTGTGTTGCCTGCCTGGGTGGTGGGTGTAGTGCTTTCATTTGCGTTGCCGTTTGTGCCTCCATGGTG
GGCTTGGTTGTCTGTAATCATTGGCGCGCTTGCGTTGTGTCGAAGATTTGCTGTGGCTTGGTTGGTGCTGGCCGTCTGTG
TGGGCATGGTGTTTGGGGTGTGGCGGACCGGGCTGGTGTTGGCTGGTCAATGGCCTGTAGGGGAGGCAACGGCTAAAGTT
TTGACGGTTGAAGTGGCGGATATGCCGCGTGATGATGGTCGGCGTGTGCAGTTTGCGGCAAGGGCTTGGGATGAACAGGG
GCAGGCATTTGATTTGATGTTGTCTGATTATCAGCGGCGCGATTGGGCGGTGGGCAGCAGGTGGTCTGTATCGGCGCGGG
TAAAGCCGGTGATTGGTGAAGTGAATGTGCGCGGTTTAAACCGTGAAACCTGGGCTTTGGTCAATGGCATTGATGGCATG
GGTACTTTGGGGCGCGACAGGAAACTCGTGCGGCAAGGTGGCGGTTTCGGTTTGGCTAATATGCGTGATGCGGTAAGCCG
GAGTTGGCAGAGAACGGCGAACAAGTATCCTGAGTTTTCAGACGGCATAGGGCTGATGCGTGCTTTGAGTATTGGCGAGC
AATCGGCGTTGCGGCCGCCTTTGTGGCAGGCATTTCGGCCTTTGGGGCTGACGCACTTGGTCAGTATTTCGGGCTTGCAT
GTGACGATGGTGTCGGTATTGTTTGCCTGGCTGGTTAAGCGAATTTTCCGTTATTTGCCGTGGATTCCGGCGAAACCGCG
TGTGTGGATATTGGCCGGCGGTGTTGCCGGTGCTTTGTTTTATGCGCTTTTGGCCGGTTTTTCCGTGCCGACGCAACGCA
GTGTGTTGATGTTGGTTGCGTTTGCGTGGGCATGGTGGCGCGGCAGTGGCGGCTCGGGCTGGATGGTGTGGTGGCAGGCT
TTGGCCGTTGTTTTGCTGTTGGATCCGTCGGCTGTATTGGGCGTGGGAACTTGGTTGTCTTTCGGTTTGGTTGCTGCTTT
GATTTGGGCTTCATCAGGCCGTCTGAAAGAGTCGGGCTGGCGTTTGGCTGTACGGGGGCAATGGGCGGCGACGGTATTGT
CGGTAGTATTGCTGGGCTATTTGTTTGCTTCGTTACCTTTGCTCAGTCCGTTGGTTAATGCGCTGGCTATTCCTTGGTTT
TCTTGGGTGTTGACGCCGTTGGCTTTGCTGGGTTCGGTTTTTCCGTTTGAGCTTGTCCAGTTGGTAGCGGCATTTTTGGC
GGAATATACTTTACGCGGTTTGGTATGGCTGGCTACGGTATCGCCTGAATTTGCCGTCGCAGCGGCGCCCGTGCCTGTGC
TGGTGTTGGCGATGATGGCGGCTTTGCTGTTATTGTTGCCTAAAGGAATGGGCTTGAAACCTTGGGCATGTCTGGTTTTA
TTGGGTTTTGTGTTTTACCGTCCTGCCAAGTTGGAGGAGGGAGTGGCAAGAGTTACCGTGATGGATGCAGGGCAAGGTTT
GTCGGTGTTGATACAAACGCGTAACCGCAATCTTTTGTTTGATACGGGAACGGAACAAGTGGCGCAAACAGGTATTGTGC
CGAGTTTGAACGCTATGGGTGTGCGCCGTTTGGACAGCCTGATTTTGTCGCACCATGATATTGACCATGACGGCGGTTTT
CAAAGTGTAGCGGCTGTCGGTGCTGATAAATTGCTTGCAGGACAACCTGAGTTTTATCCGAATGCAGAGTTTTGCCAAGA
AGATAAATGGCAATGGGACGGCGTAGATTTCGAGTTACTCAGGCCGTCTGAAAGTGTGGGCAAGGAAGATAACGATCAAA
GCTGCGTATTGCGTGTTGTGGCAAACGGCAAAGCCTTGTTGATAACCGGTGATTTGGGCGTAAAGGGCGAGGCCGGTTTG
ATTGAGAAATACGACAATGCGCTGTATAGCCAAGTGTTGGTATTGGGACATCACGGCAGCAGCACGGCTTCGTCGGGCAG
CTTTTTGCATACGGTTTCGCCGCAATATGCCGTGGCATCCAGCGGCTATGCCAATGCCTACAAACATCCGACCGTTGCCG
TACAAAATCGTGTCCGCGCACACGGCATTACTTTGTTGAGAACGGATTTGTCAGGCGCGTTGGTGTTTGCTTTGGGACAG
GGCGATATATTTCAAGGCCGTCTGAAAAAGGATAAGTTTTATTGGCAGAAGAAACCGTTTGAGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-679)

Competence protein (Competence)

(209-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

69.512

99.595

0.692