Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KCG51_RS08065 Genome accession   NZ_CP073119
Coordinates   1691413..1692789 (+) Length   458 a.a.
NCBI ID   WP_250580457.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686413..1697789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS08045 (KCG51_08055) - 1686984..1687529 (-) 546 WP_070748194.1 CreA family protein -
  KCG51_RS10815 - 1687703..1689630 (+) 1928 Protein_1561 peptidoglycan DD-metalloendopeptidase family protein -
  KCG51_RS08060 (KCG51_08070) - 1689845..1691317 (+) 1473 WP_250580455.1 S41 family peptidase -
  KCG51_RS08065 (KCG51_08075) radA 1691413..1692789 (+) 1377 WP_250580457.1 DNA repair protein RadA Machinery gene
  KCG51_RS08070 (KCG51_08080) - 1692941..1693747 (+) 807 WP_003685136.1 DUF4198 domain-containing protein -
  KCG51_RS08075 (KCG51_08085) - 1693803..1694363 (-) 561 WP_003747348.1 pseudouridine synthase -
  KCG51_RS08085 - 1694736..1695089 (+) 354 WP_254342372.1 hypothetical protein -
  KCG51_RS08090 (KCG51_08100) - 1695300..1695917 (+) 618 WP_250580459.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49360.80 Da        Isoelectric Point: 7.0601

>NTDB_id=558173 KCG51_RS08065 WP_250580457.1 1691413..1692789(+) (radA) [Neisseria subflava strain HP0069]
MAKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLVAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYSVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=558173 KCG51_RS08065 WP_250580457.1 1691413..1692789(+) (radA) [Neisseria subflava strain HP0069]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGTTCCGAATGCGGCGGTACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTGGTCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGTGAGCTTGAC
CGCGTATTGGGCGGTGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATTGCCAAAATGGCGCAAAGCCGTAAAGTACTGTACGTTTCTGGTGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCCATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTTGTCGTTATCGACTCCATCCAAACCATGTATTCCGACCAAATCACCTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTATTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGTGCTGCAAACGAACTGGGCGTATTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTTCTCGCCAGCTACCGTGACGACACCCCGGGTTCGT
GCGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTTACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGTCACGGCGGCATTGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGTGTCAAAATCGGCGAACCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCTATGCCCGAAAAAACCGTGGTTTTCGGCGAAATCGGCCTAAGCGGCGAA
GTTCGTCCCGTCGCACGCGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAACATGCCGCGCAATGCCAAAGAGTTTCCAAACCTGAAAATCTACAGCGTCAGCAGTTTGCAGGAAGCGATTGACGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus mitis NCTC 12261

47.45

98.472

0.467
  radA Streptococcus pneumoniae Rx1

47.124

98.69

0.465
  radA Streptococcus pneumoniae D39

47.124

98.69

0.465
  radA Streptococcus pneumoniae R6

47.124

98.69

0.465
  radA Streptococcus pneumoniae TIGR4

47.124

98.69

0.465
  radA Streptococcus mitis SK321

47.007

98.472

0.463