Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   KCG51_RS05745 Genome accession   NZ_CP073119
Coordinates   1180848..1182611 (+) Length   587 a.a.
NCBI ID   WP_250579775.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1175848..1187611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS05725 (KCG51_05735) recR 1177620..1178225 (+) 606 WP_049329607.1 recombination mediator RecR -
  KCG51_RS05730 (KCG51_05740) - 1178288..1178575 (-) 288 WP_003683377.1 hypothetical protein -
  KCG51_RS05735 (KCG51_05745) - 1178790..1180039 (+) 1250 Protein_1101 lipoprotein-releasing ABC transporter permease subunit -
  KCG51_RS05740 (KCG51_05750) lolD 1180032..1180715 (+) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG51_RS05745 (KCG51_05755) recD 1180848..1182611 (+) 1764 WP_250579775.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG51_RS05750 (KCG51_05760) - 1182707..1183906 (+) 1200 WP_254342199.1 hypothetical protein -
  KCG51_RS05755 (KCG51_05765) - 1184007..1184408 (-) 402 WP_003679090.1 RNA-binding S4 domain-containing protein -
  KCG51_RS05760 (KCG51_05770) - 1184613..1185572 (+) 960 WP_250579779.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  KCG51_RS05765 (KCG51_05775) tilS 1185661..1187016 (+) 1356 WP_254342201.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64929.98 Da        Isoelectric Point: 5.4026

>NTDB_id=558167 KCG51_RS05745 WP_250579775.1 1180848..1182611(+) (recD) [Neisseria subflava strain HP0069]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPFILHGQKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDTKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPTFNHEHPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLEALSRPTALDKETAEKLEVYLPDHGFEIKERPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTESEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALKWQFEQPDEQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=558167 KCG51_RS05745 WP_250579775.1 1180848..1182611(+) (recD) [Neisseria subflava strain HP0069]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGTGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAATGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTCGATGCCTTAAGCAACTTGCCGAACTTGGTCGGCAATGCGGATAAACCGTTTATCCTGCACGGACAGAAATTATTT
TTAGGGCGAATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCCAGTGCAGAGGCGGAAGAAGTGAA
TTTCATGGCAGCTTCAAAAAGCCTGAGCGACTGGTTTGACACTAAAGACAGTAAAGAGCAGCGGGATGCTGCAGCTTTGG
CTTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGTAAGACGACGACCGTAGCAAAGCTTTTGGGTCTG
ATTTGCAATAACAGTACGAAGCTGCCACGTATCGCTTTGGCGGCGCCGACGGGCAAAGCGGCTGCGCATATGGCACGGGC
TTTGCAGCGTGCTTTAGACGGTTTTGATTTGTCTCCGAGCATTAAAGCGCATTTGGAAAATTTGGAAGGGCAGACCGTCC
ATCGATTGTTGAAACTGCGGCCGCCGCAAATGCGCCCTACGTTTAATCATGAACATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTGTTGGATTTGTTGCGCGCCGTGCCGACTGGTTGTCGTTTGGTGTT
GCTTGGTGATGAAAACCAGTTGCCGTCGGTTGGCTTGGGGGCTGTGTTGGAGGCATTGTCGCGTCCGACGGCTTTGGATA
AAGAAACCGCTGAGAAGCTGGAAGTGTACCTGCCCGATCATGGCTTTGAGATTAAAGAGCGGCCACAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGTGCAGACAGCGGTATCGGCTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAACAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAATTGGAAATGAAATCAGGCCGTTTGAAAGAGCAGG
TTGCTTTGCTGTATCAAAAGCAACAGGATTATTGGCAGGCTGTGGCAGAGAATAATGTTGCACTCGCCTATGGTCATGCT
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACTTGCAACGACA
AGGCAAAGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACGCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGAAAGATGAAGAATCATTAAATGGTTTGTCTGCATATTTTCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCACAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCCCCGTCAGTGCCTGCAACGACGGAAAGCGAAGAGGAAGCCCGAGGTTTGGATAAGG
CTCTGCTTTACACGGCCATTACCCGTGCGCGTGAACGTTTTGTATTTTGGGGAAATGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCACCAAAAACGCAGGACGGCATTGGCCGATGCCTTGAAATGGCAGTTTGAACAGCCTGATGAGCAGGCTTCCGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_19)

(127-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.232

98.296

0.572