Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   KCG51_RS04035 Genome accession   NZ_CP073119
Coordinates   837129..839168 (+) Length   679 a.a.
NCBI ID   WP_254342839.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 832129..844168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS04005 (KCG51_04030) - 832288..833103 (+) 816 WP_254342837.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG51_RS04010 (KCG51_04035) purN 833200..833826 (+) 627 WP_254342985.1 phosphoribosylglycinamide formyltransferase -
  KCG51_RS04015 (KCG51_04040) - 833857..834525 (+) 669 WP_250579203.1 DUF3108 domain-containing protein -
  KCG51_RS04020 (KCG51_04045) - 834583..836076 (-) 1494 WP_250579204.1 Rne/Rng family ribonuclease -
  KCG51_RS04025 (KCG51_04050) grxC 836314..836571 (+) 258 WP_003684090.1 glutaredoxin 3 -
  KCG51_RS04030 (KCG51_04055) secB 836593..837027 (+) 435 WP_003745844.1 protein-export chaperone SecB -
  KCG51_RS04035 (KCG51_04060) recG 837129..839168 (+) 2040 WP_254342839.1 ATP-dependent DNA helicase RecG Machinery gene
  KCG51_RS04040 (KCG51_04065) gdhA 839239..840573 (-) 1335 WP_254342841.1 NADP-specific glutamate dehydrogenase -
  KCG51_RS04045 (KCG51_04070) - 840986..841780 (+) 795 WP_070591013.1 thymidylate synthase -
  KCG51_RS04050 (KCG51_04075) - 841840..843279 (-) 1440 WP_107810255.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75042.88 Da        Isoelectric Point: 6.8919

>NTDB_id=558158 KCG51_RS04035 WP_254342839.1 837129..839168(+) (recG) [Neisseria subflava strain HP0069]
MTPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSSSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGMLPAWQRLKFDELLAQQLSMRLARQKRVSGSAT
ALGGDGTLTQALRHALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQTALPELSIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=558158 KCG51_RS04035 WP_254342839.1 837129..839168(+) (recG) [Neisseria subflava strain HP0069]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCGGCG
TGCCGTGTCAGGTTGAGGGCGAAGTTATCCATCAGGAAGTGACATTTAAACCGCGCAAGCAGCTGATTGTCCAAATCGCC
GACGGTTCCAGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCATCCCAAAATCCGTGATGCCGAGAGCA
GCGGTTTGGCAGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGTTTAAATCAACCTACTTTGCGCCGCATCATTCAG
ACGGCCTTGGACGTTACGCCGTTGCACGACACCTTACCCGATGCTTTATTAGGCCGTCTGAAATTGCCGCACCTTGCCGA
AAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTCACTATTCATCAACTTTCAGATGGCATGCTGCCTGCATGGCAAC
GGCTCAAATTTGACGAACTTTTGGCACAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGTGTCAGCGGCTCGGCCACG
GCATTGGGTGGCGACGGCACATTGACTCAAGCCCTGCGCCACGCCTTGCCGTTTGCCCTGACCGATGCGCAAGAAAAAGT
TGTTTCCGAAATCTGCCGCGATATGGCGCAAACCCATCCCATGCACCGCCTGCTGCAAGGAGATGTCGGCAGCGGCAAAA
CCATTGTGGCTGCTTTGTCCGCGCTGACCGCTATTGAATCCGGCGCGCAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCATTTCATCAAGTTCAAACAATGGCTTGAACCTTTAGGACTCGAAGTCGTCTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTTGCCGACGGCACTGTCAAAATCGCCGTCGGCACACACGCCCTGTTTT
CAGACGACGTCGAGTTCCAAAATCTGGGCTTGGTGATTGTGGACGAGCAACACCGCTTCGGCGTTGCCCAACGCCTCGCC
CTTAAAAATAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACCCCCATTCCGCGCACGCTCGCCATGAGTTTTTT
CGCCGACTTGGACGTGTCCGTTATCGACGAATTGCCGCCTGGACGTACGCCGATTAAGACTCGCCTCGTCAACAACGTCC
GCCGCGCCGAGGTCGAAGGCTTCGTCCTTAATATTTGTCGCAAAGGGCAACAGGCATACTGGGTTTGCCCGCTGATTGAA
GAGAGCGAAACCTTGCAACTGCAAACCGCCACCGAAACCCTCGAGCAACTTCAGACGGCCTTGCCCGAACTCAGCATCGG
CTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCGGAGTTTGCCGCAGGCCGTCTGAACGTCTTGG
TTGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATGGGC
TTGGCACAGCTGCACCAATTACGCGGTCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGTGTCCTCCTGTTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGTCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTCCCCATGCTACGCTTCGCCAACCTTGAAGAAGAC
TTACACCTTTTGGAACAAGCGCGCGAAATCGCCCCTTTGCTGATTGAACAAAACCCTGAAATCGTCGAAGCGCATTTGGC
AAGATGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

RecG wedge domain (RecG_wedge)

(14-163)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.667

100

0.937