Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KCG51_RS03990 Genome accession   NZ_CP073119
Coordinates   829164..829625 (-) Length   153 a.a.
NCBI ID   WP_188209174.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 824164..834625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS03960 (KCG51_03985) - 824206..824894 (+) 689 Protein_764 toxin-antitoxin system YwqK family antitoxin -
  KCG51_RS03965 (KCG51_03990) - 824942..825502 (-) 561 WP_250579198.1 adenine phosphoribosyltransferase -
  KCG51_RS03970 (KCG51_03995) gmk 825671..826288 (+) 618 WP_003686079.1 guanylate kinase -
  KCG51_RS03975 (KCG51_04000) rpoZ 826341..826547 (+) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  KCG51_RS03980 (KCG51_04005) - 826687..828807 (+) 2121 WP_254342835.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KCG51_RS03985 (KCG51_04010) - 828927..829088 (-) 162 WP_049344044.1 hypothetical protein -
  KCG51_RS03990 (KCG51_04015) recX 829164..829625 (-) 462 WP_188209174.1 recombination regulator RecX Regulator
  KCG51_RS03995 (KCG51_04020) - 829726..830439 (-) 714 WP_188209173.1 phosphoglycolate phosphatase -
  KCG51_RS04000 (KCG51_04025) - 830862..832127 (+) 1266 WP_188209172.1 Glu/Leu/Phe/Val dehydrogenase -
  KCG51_RS04005 (KCG51_04030) - 832288..833103 (+) 816 WP_254342837.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG51_RS04010 (KCG51_04035) purN 833200..833826 (+) 627 WP_254342985.1 phosphoribosylglycinamide formyltransferase -
  KCG51_RS04015 (KCG51_04040) - 833857..834525 (+) 669 WP_250579203.1 DUF3108 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17876.10 Da        Isoelectric Point: 7.1697

>NTDB_id=558157 KCG51_RS03990 WP_188209174.1 829164..829625(-) (recX) [Neisseria subflava strain HP0069]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDLRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCREFLPDREDDLQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQTALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=558157 KCG51_RS03990 WP_188209174.1 829164..829625(-) (recX) [Neisseria subflava strain HP0069]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTCGGCTTGAAACG
CAAACTGGCTCCCCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCTACGTTACGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTACGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGTATCGATGCAGATGACTGTCGGGAGTTCCTACCCGATAGGGAGGACGATCTGCAAACCGCCATTTCCGTCTTGCG
TAAAAAATTCAAGCAGGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGTG
CCGACACCATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

78.378

96.732

0.758