Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   KCG51_RS03210 Genome accession   NZ_CP073119
Coordinates   660843..664142 (+) Length   1099 a.a.
NCBI ID   WP_254342788.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 655843..669142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS03185 (KCG51_03225) - 656704..657024 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG51_RS03190 (KCG51_03230) metK 657134..658303 (-) 1170 WP_254342784.1 methionine adenosyltransferase -
  KCG51_RS03195 (KCG51_03235) - 658835..659032 (+) 198 WP_107858221.1 hypothetical protein -
  KCG51_RS03200 (KCG51_03240) - 659100..659561 (+) 462 WP_254342786.1 hypothetical protein -
  KCG51_RS03205 (KCG51_03245) - 659715..660590 (+) 876 WP_188209268.1 lysophospholipid acyltransferase family protein -
  KCG51_RS03210 (KCG51_03250) recC 660843..664142 (+) 3300 WP_254342788.1 exodeoxyribonuclease V subunit gamma Machinery gene
  KCG51_RS03215 (KCG51_03255) - 664146..664652 (+) 507 WP_254342790.1 thioredoxin family protein -
  KCG51_RS03220 (KCG51_03260) lapB 664763..665932 (-) 1170 WP_003745547.1 lipopolysaccharide assembly protein LapB -
  KCG51_RS03225 (KCG51_03265) - 665958..666281 (-) 324 WP_254342792.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  KCG51_RS03230 (KCG51_03270) ilvE 666501..667499 (+) 999 WP_250579101.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 124739.48 Da        Isoelectric Point: 4.6699

>NTDB_id=558155 KCG51_RS03210 WP_254342788.1 660843..664142(+) (recC) [Neisseria subflava strain HP0069]
MFYLFQSDRLEALAEMCAHIHQALPLDAVLAQEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKKGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQKDIQNLIMPSERL
YQQEEGEAGGQQALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQKNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
AVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
EPADVEGWVQRCRDVLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELAEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPPVEAQPFFLEALS
QEEPGKTIQQGELISFWRNPVKVWLKRNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARRKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVEAELIRSDKRPSEPYELHFDDLVLQGTIGNLYECGRIVFQNQKDNAPNRIARLLEHLIF
CAVAPQSVANRQTHIVSLGQTETYAAIGQEAARALLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYGKKEDWDAALRKAYE
VFNGNKMNKAQKEYTEVKLVFGHSDEAPLEEPLFENLVVNLLVPLLNSAAGKNNATEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=558155 KCG51_RS03210 WP_254342788.1 660843..664142(+) (recC) [Neisseria subflava strain HP0069]
ATGTTTTATCTCTTTCAATCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGGCCTTGCCTTTGGA
TGCGGTATTGGCACAGGAAGAAGTGGTGGTGCAGAGCCAGGGGATGCGGCGTTATCTGAATGTGTTTTTCGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCTGCCGGTTTGGCGTGGCAGCTGATGCGCAAATTGGTTCCCGATGTG
CCGCCGCTCAGTCCGTTTTCGCCTGAAGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAAGCGTTTCAGACGGC
CCCGGAATACGAAAACGTGCGCTTGAAGCTGGAAAGTTATTTGCATAGTTCGGCATCAGCGGATTATCAGCTTGCCGGAC
AGATGGCGGATATTTTCGACCAATATTTGGTGTACCGCCCGGATTGGATTGATGCGTGGCAGGCCGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCGGCGCCTCACCGCGTGGC
CTTGTGGGAAAAGCTGTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTGTTCGTATTCGGCATTTCGACAATGG
CGCCGATGTATTTGCAACTCTTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCACTCAACCCGAGCAGCCAA
TATTGGGGCGAGGTCATTGATGAGGCGCAGATTTTGAAAAAGGGTGATGAGGCGGATTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGGCGCGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTATTGCATTGCCTACAAAAAGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TATCAACAGGAAGAAGGCGAAGCAGGCGGGCAACAGGCTTTGGTTCAGGTCCACGATGCGGACGGCAATCCAGTGTGTGT
CGAGCCGGACAAGCTGTTGAATGACGGCTCCGTCAAAATCGTCGCGGCCCACAGCCCTTTGCGCGAATTGCAGATTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAAAAATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAA
CCCTACAGCCCGTTTATCGAAGCCGTTTTTGGGCAGGAGCAGGCCGGCAGCCAGGCGTTGCCGTATTCGATTTCGGATGT
GAAACTCAGCCGCCGCCAGCCCTTGCTGTATGCTTTGGCGCAAACGTTGGACTTGCTGGAAAGCCGGTTTGAAGTGGACA
AGGTTTTACCTTTGCTGGAAAGCCGGTTGGTACTGCAACGCTTCGGTTTGAGCGAGGAAGATGTGCCGCTGCTGCATGAG
GCTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGTAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCCGAAGGCGGCAACGGCATGTGGCAGGGCGTGAGCGCGTGGCATA
GCAACGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGCAA
GAACCTGCCGATGTGGAAGGCTGGGTGCAGCGTTGTCGCGATGTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCA
ATACGCGAAACAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGTCGTTTTTTGGACAGTGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATCACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGCTGGGTTTGAATGACGGCGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTCGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGTT
ATCTTTTCCTCGAAGCCTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTTGCGCCGTCTTCGTTAATCAGCGAGCTGCTGGATACCATTGCCGCCATGACAGGGAAAAGCGGGCGCGAGTTGGC
GGAGAAATGGGTGAAACATCATCCGTTGCAGGCGTTTTCGCGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTACGCCGATGCGCTGAACCAACCGCCAGTAGAAGCGCAGCCGTTTTTCCTTGAGGCTTTAAGT
CAGGAAGAGCCGGGCAAAACCATTCAGCAGGGCGAGCTTATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAAGAG
AAATTTAAGCTGGGATCAGCCGTATTTGGACGGCGCATGGGAATCTGCCGAACCGTTTGAGCCGCAACATGAAGGCCGGA
TTGCCGATGCCTATTTGGATGCGCGGCGCAAAGGTGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCAGAAAGCCTG
ATGCCGGTGGGCGAGTTGGGCGGCTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTAGAGGCCGAGTTGATACG
CAGTGACAAAAGGCCGTCTGAACCTTATGAATTACACTTTGACGACTTGGTTTTACAAGGCACCATCGGCAATCTTTACG
AATGCGGCCGCATTGTGTTCCAAAACCAAAAAGACAATGCGCCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGTGCCGTCGCCCCTCAATCCGTTGCCAACCGACAAACCCATATCGTCAGCCTGGGACAGACCGAAACCTATGCCGCCAT
CGGGCAAGAGGCGGCGAGGGCACTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGCCTTGCCGCTGCGGAGGAGTACGGCAAGAAAGAAGATTGGGATGCCGCCTTGAGAAAAGCCTATGAG
GTTTTTAACGGTAATAAAATGAACAAAGCGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGTCATTCGGACGAAGC
GCCGCTTGAAGAGCCACTATTTGAAAACCTTGTCGTCAATCTGCTTGTTCCGCTTTTGAACAGCGCGGCAGGGAAAAACA
ATGCAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(806-1024)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.599

99.727

0.644