Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KCG51_RS01185 Genome accession   NZ_CP073119
Coordinates   224626..226158 (+) Length   510 a.a.
NCBI ID   WP_250581172.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 219626..231158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS01165 (KCG51_01125) - 219806..220375 (+) 570 WP_250581348.1 L-threonylcarbamoyladenylate synthase -
  KCG51_RS01170 (KCG51_01130) - 220761..221201 (-) 441 WP_250581169.1 surface-adhesin E family protein -
  KCG51_RS01175 (KCG51_01135) purB 221412..222782 (+) 1371 WP_250581170.1 adenylosuccinate lyase -
  KCG51_RS01180 (KCG51_01140) msrAB 222912..224480 (-) 1569 WP_250581171.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  KCG51_RS01185 (KCG51_01145) pilA 224626..226158 (+) 1533 WP_250581172.1 signal recognition particle-docking protein FtsY Machinery gene
  KCG51_RS01190 (KCG51_01150) - 226315..227211 (-) 897 WP_070461522.1 polyprenyl synthetase family protein -
  KCG51_RS01195 (KCG51_01155) - 227195..227422 (-) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  KCG51_RS01200 (KCG51_01160) - 227558..229414 (-) 1857 WP_250581173.1 RNB domain-containing ribonuclease -
  KCG51_RS01205 (KCG51_01165) - 229523..230443 (-) 921 WP_107723908.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54621.66 Da        Isoelectric Point: 4.2200

>NTDB_id=558145 KCG51_RS01185 WP_250581172.1 224626..226158(+) (pilA) [Neisseria subflava strain HP0069]
MFSFFRRKKKQETLAPEEAQVQETAAKVESEVVQVVENIKEDAESLAESVKGHVESVVESAVETVSETVEQVREALTETP
SETVEKVEEYVEAAKEAAVETVSEAVEQVRETVAEMPSEVAEAAEEAAGQAEAAKEAAVETVSEAVERVQETVAEMPSEV
AEAAEEAAEQAEAVKEEAVEAVSEAVEQAQEAVAETPVEAPAPVEEPKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=558145 KCG51_RS01185 WP_250581172.1 224626..226158(+) (pilA) [Neisseria subflava strain HP0069]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCTGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGTTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGACATG
TTGAATCAGTTGTCGAGTCGGCTGTAGAAACTGTCAGCGAAACCGTCGAGCAGGTTCGAGAAGCTTTGACCGAAACGCCG
TCTGAAACAGTCGAAAAAGTAGAAGAATACGTTGAAGCGGCAAAAGAAGCGGCCGTTGAAACCGTCAGCGAGGCTGTCGA
ACAGGTTCGAGAAACCGTTGCCGAGATGCCGTCTGAAGTAGCTGAGGCTGCTGAAGAAGCAGCAGGACAGGCTGAGGCGG
CAAAAGAAGCAGCCGTTGAAACCGTCAGCGAGGCTGTTGAACGGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGTA
GCTGAGGCTGCTGAAGAAGCAGCAGAACAGGCCGAAGCGGTCAAAGAAGAAGCTGTTGAAGCAGTTAGCGAAGCTGTCGA
GCAAGCTCAAGAAGCCGTTGCGGAAACACCGGTTGAAGCTCCTGCTCCGGTGGAAGAACCCAAGCTTAGTTGGGCCGCGC
GTTTGAAACAAGGTTTGACCAAATCACGCGATAAAATGGCAAAATCGTTGGCCGGCGTATTCGGCGGCGGACAAATTGAC
GAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACTAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
TGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAACGAATTGCGCGGCGCGCTGAAAGATGCGCTGTATGACT
TGATTAAGCCTCTGGAAAAACCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGC
GCGGGTAAAACCACATCTATCGGCAAATTGGCCAAATACTTCCAAGCGCAGGGCAAATCTGTGTTGTTGGCGGCAGGTGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTCCAAGCTTGGGGCGAACGCAACAATGTAACCGTGATTTCGCAAACCACAG
GCGATTCCGCAGCCGTTTGCTTCGATGCCGTCCAAGCCGCCAAAGCGCGCGGCATCGATATCGTGCTGGCCGATACTGCC
GGCCGCCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGTCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCAT
TGGGTTTGACCGGCCTGATCGTCACCAAGCTCGACGGTACGGCCAAAGGCGGTATCCTTGCCGCCCTTGCCTCCGACCGC
CCAGTTCCCGTCCGCTACATCGGCGTAGGCGAAGGCATCGATGATTTGCGTCCGTTTAATGCCAAAGCGTTTGTGGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

84.39

80.392

0.678