Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KCG55_RS10460 Genome accession   NZ_CP073117
Coordinates   2197167..2197832 (+) Length   221 a.a.
NCBI ID   WP_254322995.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2192167..2202832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS10445 (KCG55_10520) - 2193103..2194644 (-) 1542 WP_254322993.1 OFA family MFS transporter -
  KCG55_RS10450 (KCG55_10525) - 2194868..2195449 (-) 582 WP_254322994.1 superoxide dismutase -
  KCG55_RS10455 (KCG55_10530) dnaB 2195604..2197010 (+) 1407 WP_036493702.1 replicative DNA helicase -
  KCG55_RS10460 (KCG55_10535) pilH 2197167..2197832 (+) 666 WP_254322995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG55_RS10465 (KCG55_10540) pilV 2197848..2198498 (+) 651 WP_254322996.1 type IV pilus modification protein PilV -
  KCG55_RS10470 (KCG55_10545) pilJ 2198501..2199436 (+) 936 WP_254322997.1 pilus assembly protein PilW Machinery gene
  KCG55_RS10475 (KCG55_10550) pilK 2199415..2199960 (+) 546 WP_254322998.1 pilus assembly protein Machinery gene
  KCG55_RS10480 (KCG55_10555) pilL 2199965..2200453 (+) 489 WP_254322999.1 PilX family type IV pilin Machinery gene
  KCG55_RS10485 (KCG55_10560) - 2200506..2201126 (-) 621 WP_254323000.1 Smr/MutS family protein -
  KCG55_RS10490 (KCG55_10565) - 2201263..2201640 (+) 378 WP_254323001.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24601.97 Da        Isoelectric Point: 8.4453

>NTDB_id=558137 KCG55_RS10460 WP_254322995.1 2197167..2197832(+) (pilH) [Neisseria subflava strain HP0015]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRVASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNEDLRYQNDTVDLSIRSIILNGDTDKVEYRFNYIPIGNDRSALSASASKEVWWRFLPNGTFGH
STDGKNYQFSDGHIKISLTDKSAADAETKKARATVLLINGNGHVEICAKNDERKMCEYTSK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=558137 KCG55_RS10460 WP_254322995.1 2197167..2197832(+) (pilH) [Neisseria subflava strain HP0015]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGTAGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CTCGTAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGTTAAAATTAAATCCGATGGTTCACCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGGCCTACGCCGATAAAAACGAAGACTTACGCTATCAAAACGACAC
AGTCGATTTATCCATCCGCTCCATTATCCTTAATGGAGATACCGACAAAGTGGAATACCGCTTCAACTATATCCCTATCG
GCAATGACCGTTCTGCCCTCTCTGCTTCAGCTTCAAAAGAAGTATGGTGGAGATTCCTTCCCAATGGTACATTTGGCCAT
TCAACTGATGGCAAGAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTAACAGATAAATCCGCTGCAGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATGTGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.709

100

0.552