Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   KCG55_RS10150 Genome accession   NZ_CP073117
Coordinates   2131933..2133696 (-) Length   587 a.a.
NCBI ID   WP_254322961.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2126933..2138696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS10125 (KCG55_10205) tilS 2127562..2128455 (-) 894 WP_254322958.1 tRNA lysidine(34) synthetase TilS -
  KCG55_RS10130 tilS 2128425..2128886 (-) 462 WP_254322959.1 tRNA lysidine(34) synthetase TilS -
  KCG55_RS10135 (KCG55_10210) - 2128978..2129937 (-) 960 WP_070591224.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  KCG55_RS10140 (KCG55_10215) - 2130142..2130543 (+) 402 WP_036490717.1 RNA-binding S4 domain-containing protein -
  KCG55_RS10145 (KCG55_10220) - 2130637..2131836 (-) 1200 WP_254322960.1 hypothetical protein -
  KCG55_RS10150 (KCG55_10225) recD 2131933..2133696 (-) 1764 WP_254322961.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG55_RS10155 (KCG55_10230) lolD 2133830..2134513 (-) 684 WP_254322962.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG55_RS10160 (KCG55_10235) - 2134506..2135756 (-) 1251 WP_150537405.1 lipoprotein-releasing ABC transporter permease subunit -
  KCG55_RS10165 (KCG55_10240) - 2135971..2136258 (+) 288 WP_003683377.1 hypothetical protein -
  KCG55_RS10170 (KCG55_10245) recR 2136321..2136926 (-) 606 WP_003679078.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64772.94 Da        Isoelectric Point: 5.5325

>NTDB_id=558134 KCG55_RS10150 WP_254322961.1 2131933..2133696(-) (recD) [Neisseria subflava strain HP0015]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKEDVYALSNLPNLVGNADKPLILQGRKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDTKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFSHEYPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKATAEKLEVYLPDHGFEIKERPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWAAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKASGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAFFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTESEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALKWQFEQPDEQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=558134 KCG55_RS10150 WP_254322961.1 2131933..2133696(-) (recD) [Neisseria subflava strain HP0015]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGCGC
ATCCGTTATTGAGCCTTATGTGGTTCGATTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGAGG
ATGTCTATGCCTTAAGCAACTTGCCGAACTTGGTCGGTAATGCGGATAAACCGCTTATCCTGCAAGGCCGGAAATTGTTT
TTGGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCCAGTGCCGAAGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATACTAAAGACAGTAAAGAGCAACGGGATGCTGCGGCTTTGG
CATTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGTAAGACGACGACCGTAGCAAAGCTTTTGGGTCTG
ATTTGTAATAACAGTACGAAGCTGCCCCGTATCGCTTTGGCGGCGCCGACAGGCAAAGCGGCTGCGCATATGGCACGAGC
TTTGCAGCGTGCTTTGGATGGTTTTGATTTGTCCCCAAGTATCAAAGCGCATTTGGAAAACTTGGAAGGGCAGACCGTCC
ATCGATTGTTGAAACTGCGGCCGCCGCAAATGCGCCCTGCGTTTAGTCATGAATATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTGTTGGATTTGTTGCGCGCCGTGCCGACCGGCTGTCGTCTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGCTTGGGAGCCGTATTGGCGGCATTATCGCGTCCGACGGCTTTGGATA
AAGCAACCGCTGAAAAGCTGGAGGTGTACCTGCCCGATCATGGCTTTGAGATTAAAGAGCGGCCACAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGTGCAGACAGCGGTATCGGTTGTTTGGCGAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGATAAGTTCCCCAAAGAATTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TTGCCTTGCTGTATCAAAAGCAACAGGATTATTGGGCGGCCGTGGCAGAGAATAATGTTGCACTCGCCTATGGTCATGCT
GCCGATGTGGTGGTATTGGCGGCGTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACTTGCAACGACA
AGGCAAGGCTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACGCACAATGATTACATGTTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGAAAGATGAGGAATCATTGAATGGTTTGTCTGCATTTTTTCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCATAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCTCCATCAGTGCCTGCAACGACGGAAAGCGAAGAAGAAGCACGGGGTTTGGATAAAG
CTCTGCTTTACACGGCCATTACCCGTGCGCGTGAACGATTTGTGTTTTGGGGAAATGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCACCAAAAACGCAGGACGGCATTGGCCGATGCCTTGAAATGGCAGTTTGAACAGCCTGATGAGCAGGCTTCCGT
TTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-288)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.059

98.296

0.571