Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   KCG55_RS07240 Genome accession   NZ_CP073117
Coordinates   1512020..1514059 (+) Length   679 a.a.
NCBI ID   WP_254322576.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1507020..1519059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS07210 (KCG55_07280) - 1507179..1507994 (+) 816 WP_070645123.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG55_RS07215 (KCG55_07285) purN 1508091..1508717 (+) 627 WP_254323651.1 phosphoribosylglycinamide formyltransferase -
  KCG55_RS07220 (KCG55_07290) - 1508748..1509416 (+) 669 WP_250579203.1 DUF3108 domain-containing protein -
  KCG55_RS07225 (KCG55_07295) - 1509474..1510967 (-) 1494 WP_250579204.1 Rne/Rng family ribonuclease -
  KCG55_RS07230 (KCG55_07300) grxC 1511205..1511462 (+) 258 WP_003684090.1 glutaredoxin 3 -
  KCG55_RS07235 (KCG55_07305) secB 1511484..1511918 (+) 435 WP_003745844.1 protein-export chaperone SecB -
  KCG55_RS07240 (KCG55_07310) recG 1512020..1514059 (+) 2040 WP_254322576.1 ATP-dependent DNA helicase RecG Machinery gene
  KCG55_RS07245 (KCG55_07315) gdhA 1514128..1515462 (-) 1335 WP_254322578.1 NADP-specific glutamate dehydrogenase -
  KCG55_RS07250 (KCG55_07320) - 1515876..1516670 (+) 795 WP_070591013.1 thymidylate synthase -
  KCG55_RS07255 (KCG55_07325) - 1516730..1518169 (-) 1440 WP_254322579.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75068.94 Da        Isoelectric Point: 6.9941

>NTDB_id=558129 KCG55_RS07240 WP_254322576.1 1512020..1514059(+) (recG) [Neisseria subflava strain HP0015]
MTPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGSAT
ALGGDGTLTQALRHALPFALTDAQERVVSEICHDMVQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVTQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQAALPELSIGLVHGRMKAAEKAKVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESMCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPMLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=558129 KCG55_RS07240 WP_254322576.1 1512020..1514059(+) (recG) [Neisseria subflava strain HP0015]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGATAAACTTAACCTCCATACTGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCACCGATCGGCG
TGCCGTGTCAGGTCGAGGGCGAAGTCATCCATCAGGAAGTGACATTTAAACCGCGCAAGCAGCTGATTGTCCAAATCGCC
GACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTTATCCACTTTTATGCCAGCAACCAGAAACAGATGGCGGTCGGCAAGCG
CATCCGCGCCGTGGGCGAAATCAAGCACGGGTTTCACGGCGACGAGATGATTCATCCTAAAATCCGCGATGCCGAGAGCA
GCGGTTTGGCAGAAAGCCTTACGCCGATTTATCCGACCGTAAACGGTTTAAATCAACCCACTTTGCGCCGTATTATTCAG
ACGGCCTTGGACGTTACGCCGTTGCACGACACCTTGCCTGATGCTTTATTAGGCCGTCTGAAATTGCCGCACCTTGCCGA
AAGCCTGCGCCTTTTGCATTCGCCGCCGCCAAGCTTCACCATTCATCAACTTTCAGACGGCACGCTGCCTGCATGGCAAC
GGCTCAAATTTGACGAACTTTTGGCGCAACAGCTTTCTATGCGCTTGGCACGGCAGAAGCGCGTCAGCGGCTCGGCCACG
GCATTGGGTGGCGACGGCACATTGACTCAAGCCCTGCGCCACGCTTTGCCGTTTGCCCTGACTGATGCGCAAGAAAGAGT
TGTTTCCGAAATCTGCCACGATATGGTGCAAACCCATCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTGGCCGCCTTGTCTGCTTTGACGGCTATCGAATCCGGCGCGCAGGTAGCTGTAATGGCGCCGACTGAAATCCTT
GCCGAACAACATTTCATCAAGTTCAAACAATGGCTTGAACCTTTAGGACTCGAAGTCGTCTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTTGCCGACGGCACTGTCAAAATCGCCGTCGGCACACACGCCCTGTTTT
CAGACGACGTCGAGTTCCAAAATCTGGGCTTGGTGATTGTGGACGAGCAACACCGCTTCGGTGTCACCCAACGCCTCGCC
CTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTCGCCATGAGTTTCTT
CGCCGACTTGGACGTGTCTGTTATTGACGAGTTGCCGCCCGGACGTACGCCGATTAAAACCCGCCTCGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTTAATATTTGTCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTCGAGCAGCTTCAGGCGGCATTGCCCGAACTCAGCATCGG
CTTGGTGCACGGGCGCATGAAAGCTGCCGAAAAAGCCAAAGTCATGGCGGAATTTGCTGCAGGTCGTCTGAATGTATTGG
TCGCCACCACCGTTATCGAAGTCGGTGTAGATGTGCCCAACGCCGCCCTGATGGTCATCGAACATGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGACGGGTAGGGCGCGGCGCGGCAGAAAGTATGTGCGTCCTCCTGTTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTTGGCGCGCGGCAAAGCGGTGTCCCCATGCTGCGCTTCGCCAACCTCGAAGAAGAC
CTGCACCTTTTAGAACAAGCGCGCGAAATTGCCCCGATGCTGATTGAACAAAACCCTGAAATCGTCGAAGCGCATTTGGC
AAGATGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

RecG wedge domain (RecG_wedge)

(14-163)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.078

100

0.931