Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KCG55_RS07195 Genome accession   NZ_CP073117
Coordinates   1504056..1504517 (-) Length   153 a.a.
NCBI ID   WP_254322574.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499056..1509517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS07165 (KCG55_07235) - 1499072..1499809 (+) 738 WP_070645133.1 toxin-antitoxin system YwqK family antitoxin -
  KCG55_RS07170 (KCG55_07240) - 1499856..1500416 (-) 561 WP_254322569.1 adenine phosphoribosyltransferase -
  KCG55_RS07175 (KCG55_07245) gmk 1500585..1501202 (+) 618 WP_107723555.1 guanylate kinase -
  KCG55_RS07180 (KCG55_07250) rpoZ 1501255..1501461 (+) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  KCG55_RS07185 (KCG55_07255) - 1501566..1503722 (+) 2157 WP_254322571.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KCG55_RS07190 (KCG55_07260) - 1503819..1503980 (-) 162 WP_254322572.1 hypothetical protein -
  KCG55_RS07195 (KCG55_07265) recX 1504056..1504517 (-) 462 WP_254322574.1 recombination regulator RecX Regulator
  KCG55_RS07200 (KCG55_07270) - 1504618..1505331 (-) 714 WP_254322575.1 phosphoglycolate phosphatase -
  KCG55_RS07205 (KCG55_07275) - 1505753..1507018 (+) 1266 WP_003685975.1 Glu/Leu/Phe/Val dehydrogenase -
  KCG55_RS07210 (KCG55_07280) - 1507179..1507994 (+) 816 WP_070645123.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG55_RS07215 (KCG55_07285) purN 1508091..1508717 (+) 627 WP_254323651.1 phosphoribosylglycinamide formyltransferase -
  KCG55_RS07220 (KCG55_07290) - 1508748..1509416 (+) 669 WP_250579203.1 DUF3108 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17921.14 Da        Isoelectric Point: 7.1699

>NTDB_id=558128 KCG55_RS07195 WP_254322574.1 1504056..1504517(-) (recX) [Neisseria subflava strain HP0015]
MKLPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCREFLPDREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQTALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=558128 KCG55_RS07195 WP_254322574.1 1504056..1504517(-) (recX) [Neisseria subflava strain HP0015]
ATGAAACTTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTCGGCTTGAAACG
CAAACTGGCTCCCCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGGAATTGGCAATCCG
ACCAGCGTTATGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTACGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGTATCGATGCAGACGACTGTCGGGAATTCTTACCCGACAGGGAGGACGAGCTGCAAACCGCCATTTCCGTCTTGCG
TAAAAAATTCAAGCAAGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGCG
CCGACACCATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.703

96.732

0.752