Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   KCG55_RS06410 Genome accession   NZ_CP073117
Coordinates   1330137..1333424 (+) Length   1095 a.a.
NCBI ID   WP_254322419.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1325137..1338424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS06390 (KCG55_06470) - 1325754..1326074 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG55_RS06395 (KCG55_06475) - 1326200..1327264 (-) 1065 WP_254322416.1 DUF1176 domain-containing protein -
  KCG55_RS06400 (KCG55_06480) metK 1327436..1328605 (-) 1170 WP_036490097.1 methionine adenosyltransferase -
  KCG55_RS06405 (KCG55_06485) - 1328998..1329873 (+) 876 WP_254322418.1 lysophospholipid acyltransferase family protein -
  KCG55_RS06410 (KCG55_06490) recC 1330137..1333424 (+) 3288 WP_254322419.1 exodeoxyribonuclease V subunit gamma Machinery gene
  KCG55_RS06415 (KCG55_06495) - 1333428..1333934 (+) 507 WP_254322420.1 thioredoxin family protein -
  KCG55_RS06420 (KCG55_06500) lapB 1334049..1335218 (-) 1170 WP_188209265.1 lipopolysaccharide assembly protein LapB -
  KCG55_RS06425 (KCG55_06505) - 1335244..1335567 (-) 324 WP_049328701.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  KCG55_RS06430 (KCG55_06510) ilvE 1335782..1336780 (+) 999 WP_254322422.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 1095 a.a.        Molecular weight: 124620.09 Da        Isoelectric Point: 4.6671

>NTDB_id=558126 KCG55_RS06410 WP_254322419.1 1330137..1333424(+) (recC) [Neisseria subflava strain HP0015]
MFYLFQSDRLESLAEMCARIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLVQLDKSVLPQRFFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEESEAGLVQVHDADGNPVYVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIEPYSP
FIEAVFGQAHAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHETVAG
LNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQAPAN
VESWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEVQLAGFDGLLPCKTVIRHIRRFLDSESQAGFLSGGITFCSM
VPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDAEFAP
SSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPPAEAQPFFLEALNQEEP
GKTIHQGELISFWRNPVKVWLKRNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARRTGEDFEDTAIRLNAESLMPVG
ELGGLWQKQYQISAKNVDAELIRSDKRPSEPYEEHFDDLVLQGTIGNLYECGRIVFQNQKDNAPNRVARLLEHLIFCAVA
PQSVANRQTHIVSLGRTETYAAIEQQTAKELLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYNKKEDWDAALRKAHDVFNG
NKMSKGQKEYTEVKLVFGHLEESPLDEPLFENLVVNLLVPLLTGVAGKTDTTEQE

Nucleotide


Download         Length: 3288 bp        

>NTDB_id=558126 KCG55_RS06410 WP_254322419.1 1330137..1333424(+) (recC) [Neisseria subflava strain HP0015]
ATGTTTTATCTCTTTCAATCCGACCGTTTGGAATCGCTTGCCGAAATGTGCGCGCGTATTCATCAGGCTTCGCCCTTGGA
CTCTGTATTGGCGCAGGAAGAAGTGGTGGTACAGAGCCAGGGTATGCGGCGTTATCTGAATGTGTTTTTTGCGCGCGAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCTGCCGGTTTGGCGTGGCAGCTGATGCGCAAATTGGTTCCCGATGTG
CCGCCGCTCAGTCCGTTTTCGCCTGAAGTCATGCGCTGGCGTTTGCTGGATTTGTTCCGCAGCGAAGCGTTTCAGACAGC
CCCGGAATACGAAAACGTGCGCCTGAAGCTGGAAAGTTATTTGCATAGCTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AGATGGCGGATATTTTCGACCAATATTTAGTGTACCGCCCGGATTGGATTGATGCGTGGCAGGCAGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGACTGTGGCGTTATTTGGACGATGGCAGCCAATCTGCGCCGCATCGCGTGGC
CTTGTGGGAAAAGCTGTTGGTGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTTTTTGTATTCGGCATTTCGACAATGG
CGCCGATGTATCTGCAACTCTTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCGCTCAACCCGAGCAGCCAA
TATTGGGGCGAGGTTATCGACGAAGCGCAGATTTTGAAAAGGGGCGATGAGGCGGATTTGTCGCAGGCAGGGCATCCGCT
GTTGGCCTCTTTGGGCAAGCAGGGGCGTGATTTCTTTGATTTTTTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTATTGCATTGCCTGCAAAACGATATTCAAAACTTAATCATGCCGTCTGAACGCTTG
TATCAACAGGAAGAAAGTGAAGCAGGTTTGGTTCAAGTCCATGATGCGGACGGCAATCCAGTGTATGTCGAGCCGGACAA
GCTGTTGAATGACGGCTCCGTCAAAATCGTCGCGGCACACAGCCCTTTGCGCGAATTGCAGATTTTGAAAGAAGAGTTGT
CGCTGGTGTTGCAAAATAATCCCGATTGGCAGCCGCACGATATTGCCGTGTTGACACCAAACATCGAGCCGTACAGCCCG
TTTATCGAAGCCGTTTTTGGACAGGCGCACGCAGGCAGCCAGGCTTTACCGTATTCGATTTCGGATGTGAAACTCAGCCG
CCGTCAGCCGTTGCTGTATGCTTTGGCGCAAACTTTGGACTTGCTGGAAAGCCGGTTTGAAGTGGACAAGGTTTTGCCTT
TGCTGGAAAGCCGGTTGGTGTTGCAACGCTTCGGTTTGAGTGAGGAAGATGTGCCGCTGCTGCATGAGACTGTTGCCGGA
TTAAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGTAAAGACAACCTCTTTACTTGGCAGCAGGCGGTAGAGCG
TTTGGCCTTGGGCTGGATGCTGCCTGAAGGCGGCAACGGCATGTGGCAGGGTGTGAGCGCGTGGCATAGCAACGTCAACC
AGCTGGACGTGTTCAGCGGCTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGCAAGCGCCTGCCAAT
GTGGAAAGTTGGGTGCAGCGTTGCCGTGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCAATACGCCAAGCA
GCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGTGCAGTTGGCCGGATTTGACGGATTGTTGCCGTGTAAAACCG
TTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATCACTTTTTGCAGTATG
GTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGTTGGGTTTGAATGACGGCGATTTTCCGCGCAATACCAAAGC
GGCGGTGTTCGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGTTATCTCTTCCTCG
AAGCCTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCCGAGTTCGCGCCG
TCCTCGTTAATCAGCGAGTTGCTGGATACTATTGCCGCCATGACGGGGAAAAGCGGGCGCGAGTTGTCGGAGAAATGGGT
GAAACATCATCCTTTGCAGGCTTTTTCACGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCTTCAGTACGCGCC
AAGATTACGCTGATGCGTTGAACCAACCGCCAGCGGAAGCGCAACCGTTTTTCCTTGAGGCCTTAAATCAGGAAGAGCCG
GGCAAAACCATTCATCAGGGCGAGCTCATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAAGAGAAATTTAAGCTG
GGATCAGCCGTATTTGGACGGCGCATGGGAGTCTGCCGAACCGTTTGAGCCGCAACATGAGGGTCGGATTGCCGATGCCT
ATTTGGATGCGCGGCGCACAGGGGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCCGAAAGCCTGATGCCGGTAGGC
GAATTGGGCGGTTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTAGATGCCGAGCTGATACGCAGCGACAAAAG
GCCGTCTGAACCTTATGAAGAACACTTTGACGATTTGGTTTTACAAGGCACCATCGGCAATCTTTATGAATGCGGCCGCA
TTGTGTTCCAAAACCAAAAAGACAATGCGCCCAACCGTGTTGCCCGTTTATTGGAGCATTTGATTTTTTGCGCCGTCGCC
CCTCAATCCGTTGCAAACCGACAAACCCATATTGTCAGCTTGGGACGGACCGAAACCTATGCTGCCATCGAGCAACAAAC
AGCAAAAGAACTTTTGAAAGAATGGCTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTTTTGCCAAAACCA
GTCTTGCCGCGGCGGAGGAGTACAACAAAAAAGAGGATTGGGATGCTGCCTTGAGAAAAGCCCATGATGTTTTTAACGGC
AACAAAATGAGCAAAGGGCAGAAGGAATATACCGAAGTGAAGCTGGTGTTTGGCCATTTGGAAGAATCGCCTCTTGATGA
GCCGCTATTTGAAAACCTCGTCGTCAATCTGCTTGTTCCGCTTTTGACCGGCGTGGCAGGAAAAACCGATACAACAGAAC
AGGAGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(803-1020)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

65.736

98.082

0.645