Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KCG55_RS04375 Genome accession   NZ_CP073117
Coordinates   880572..882104 (+) Length   510 a.a.
NCBI ID   WP_254323484.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 875572..887104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS04360 (KCG55_04365) - 876216..876656 (-) 441 WP_254323482.1 surface-adhesin E family protein -
  KCG55_RS04365 (KCG55_04370) purB 876867..878237 (+) 1371 WP_254323483.1 adenylosuccinate lyase -
  KCG55_RS04370 (KCG55_04375) msrAB 878860..880478 (-) 1619 Protein_832 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  KCG55_RS04375 (KCG55_04380) pilA 880572..882104 (+) 1533 WP_254323484.1 signal recognition particle-docking protein FtsY Machinery gene
  KCG55_RS04380 (KCG55_04385) - 882266..883162 (-) 897 WP_070646462.1 polyprenyl synthetase family protein -
  KCG55_RS04385 (KCG55_04390) - 883146..883373 (-) 228 WP_254323485.1 exodeoxyribonuclease VII small subunit -
  KCG55_RS04390 (KCG55_04395) - 883509..885365 (-) 1857 WP_254323486.1 RNB domain-containing ribonuclease -
  KCG55_RS04395 (KCG55_04400) - 885474..886394 (-) 921 WP_254323487.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54793.79 Da        Isoelectric Point: 4.1909

>NTDB_id=558115 KCG55_RS04375 WP_254323484.1 880572..882104(+) (pilA) [Neisseria subflava strain HP0015]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHVESVVESAVETASETVEQVREALTETP
SETVEKVEEHVEAAKEAAVETVSEAVEQVQETVVEIPSEVAEAAEEMAEQTEAVKEAAVETLSEAVEQVQETVAEMPSEV
AEAAEEVAEQAEAVKEEVVEAVSEAVEQVQEAVAETSAEAPAPVEEYKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=558115 KCG55_RS04375 WP_254323484.1 880572..882104(+) (pilA) [Neisseria subflava strain HP0015]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATG
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGCCAGTGAAACCGTCGAACAGGTTCGGGAAGCTTTAACCGAAACGCCG
TCTGAAACAGTTGAGAAAGTAGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCCGTTGAAACCGTCAGCGAGGCTGTTGA
ACAGGTTCAAGAAACCGTTGTCGAGATACCGTCTGAAGTAGCTGAGGCTGCTGAAGAAATGGCAGAACAGACTGAAGCCG
TAAAAGAAGCAGCTGTTGAAACCCTCAGCGAGGCTGTGGAACAGGTTCAAGAAACCGTTGCCGAAATGCCGTCTGAAGTG
GCCGAGGCTGCTGAGGAAGTAGCAGAACAAGCCGAAGCGGTCAAAGAAGAAGTTGTTGAAGCAGTTAGCGAAGCTGTCGA
GCAAGTTCAAGAAGCCGTTGCGGAAACATCGGCTGAAGCCCCTGCTCCGGTAGAAGAATACAAGCTCAGTTGGGCCGCGC
GTTTGAAACAAGGCTTGACCAAATCACGCGATAAAATGGCAAAATCGTTGGCAGGCGTGTTCGGCGGCGGGCAAATCGAT
GAGGATTTGTACGAAGAGCTGGAGACCGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAACGAATTGCGCGGTGCGCTGAAAGATGCGCTGTATGACT
TGATTAAGCCGTTGGAAAAACCGCTGGTCTTGCCCGAAACGAAAGAGCCGTTCGTCATCATGCTTGCGGGCATCAACGGC
GCGGGCAAAACCACATCTATCGGCAAATTGGCCAAATACTTCCAAGCACAGGGTAAATCTGTATTGCTGGCAGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAAGCTTGGGGCGAACGCAACAATGTGACCGTGATTTCGCAAACTACGG
GCGATTCCGCAGCCGTTTGCTTCGATGCCGTCCAAGCTGCAAAAGCGCGCGGGATCGACATCGTGCTTGCCGATACTGCC
GGCCGTCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGTCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCGC
TGGGTCTGACCGGCCTTATCGTCACCAAGCTAGACGGTACGGCTAAAGGCGGTATCCTTGCCGCCCTTGCCTCTGACCGT
CCAGTTCCTGTCCGCTATATCGGCGTAGGCGAAGGTATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTCGTAGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

84.878

80.392

0.682