Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KCG55_RS00735 Genome accession   NZ_CP073117
Coordinates   149250..150626 (+) Length   458 a.a.
NCBI ID   WP_254323094.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 144250..155626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS00715 (KCG55_00715) - 144804..146693 (-) 1890 WP_254323092.1 Z1 domain-containing protein -
  KCG55_RS00720 (KCG55_00720) - 146694..147734 (-) 1041 WP_188209032.1 restriction endonuclease PLD domain-containing protein -
  KCG55_RS00725 (KCG55_00725) - 147731..148855 (-) 1125 WP_188209031.1 DNA cytosine methyltransferase -
  KCG55_RS00730 (KCG55_00730) - 148845..149171 (-) 327 WP_254323093.1 hypothetical protein -
  KCG55_RS00735 (KCG55_00735) radA 149250..150626 (+) 1377 WP_254323094.1 DNA repair protein RadA Machinery gene
  KCG55_RS00740 (KCG55_00740) - 150778..151584 (+) 807 WP_003685136.1 DUF4198 domain-containing protein -
  KCG55_RS00745 (KCG55_00745) - 151640..152200 (-) 561 WP_254323095.1 pseudouridine synthase -
  KCG55_RS00755 (KCG55_00755) - 152572..153084 (+) 513 WP_254323096.1 hypothetical protein -
  KCG55_RS00760 (KCG55_00760) - 153137..153754 (+) 618 WP_254323097.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49300.75 Da        Isoelectric Point: 7.0601

>NTDB_id=558101 KCG55_RS00735 WP_254323094.1 149250..150626(+) (radA) [Neisseria subflava strain HP0015]
MAKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAVDTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=558101 KCG55_RS00735 WP_254323094.1 149250..150626(+) (radA) [Neisseria subflava strain HP0015]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGTTCCGAATGCGGCGGCACTTCTCCGAAATGGCAGGGTAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCGCCCGAACCGAAAAACGCCCGCTTCCAATCTTGGGCGGTGG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACGGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTTGGTGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAAGTTGCCC
TACGCGCGCAACGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGTATGGAAGCGATTCAAGCGGCG
TTGAAACAGCATCAGCCCGAAGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGTGAATGTGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTATTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGTATGATACGCGCCATCAAAAATCGCTTTGGCGCAGCAAACGAATTGGGCGTGTTTGCCAT
GACCGAAAACGGTTTGAAAGGCGTATCCAACCCGTCTGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTCACACAAGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCACACGGCTTTACC
CCCAAACGCCTTACCGTCGGTCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATCGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCTGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGACCCATGCCTGAAAAAACCGTGGTTTTCGGCGAAATTGGCTTAAGCGGCGAA
GTCCGCCCTGTTGCACGCGGACAAGAGCGGCTTAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCAAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCAAACCTGAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCGATTGACGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus pneumoniae Rx1

47.566

98.69

0.469
  radA Streptococcus pneumoniae D39

47.566

98.69

0.469
  radA Streptococcus pneumoniae R6

47.566

98.69

0.469
  radA Streptococcus pneumoniae TIGR4

47.566

98.69

0.469
  radA Streptococcus mitis SK321

47.45

98.472

0.467
  radA Streptococcus mitis NCTC 12261

47.45

98.472

0.467