Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   KCG55_RS00290 Genome accession   NZ_CP073117
Coordinates   55845..59501 (+) Length   1218 a.a.
NCBI ID   WP_254323043.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50845..64501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS10560 - 51559..51687 (+) 129 WP_283255523.1 hypothetical protein -
  KCG55_RS00280 (KCG55_00280) - 51943..53682 (+) 1740 WP_254323042.1 filamentous hemagglutinin N-terminal domain-containing protein -
  KCG55_RS00285 (KCG55_00285) - 53661..55700 (+) 2040 WP_254323609.1 hemagglutinin repeat-containing protein -
  KCG55_RS00290 (KCG55_00290) recB 55845..59501 (+) 3657 WP_254323043.1 exodeoxyribonuclease V subunit beta Machinery gene
  KCG55_RS00295 (KCG55_00295) - 59561..60292 (-) 732 WP_254323044.1 phosphoadenylyl-sulfate reductase -
  KCG55_RS00300 (KCG55_00300) dinB 60408..61466 (-) 1059 WP_254323045.1 DNA polymerase IV -
  KCG55_RS00305 (KCG55_00305) - 61544..62593 (-) 1050 WP_191620652.1 sulfate ABC transporter substrate-binding protein -
  KCG55_RS00310 (KCG55_00310) - 62982..63812 (+) 831 WP_003685007.1 DUF4198 domain-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138037.39 Da        Isoelectric Point: 5.7085

>NTDB_id=558097 KCG55_RS00290 WP_254323043.1 55845..59501(+) (recB) [Neisseria subflava strain HP0015]
MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLGGKPEHISDGLNKYYDKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEKMLAEIKSYTGRPYLKFRRPEGDLKEAQAN
LQETWQKVCVQLEDLEKAFWAIFPKLNGQTYKRKTFENVFTDLKTNAESNRLPRLSKQTLEKLSLFSIDTLNSKLKKEYK
ADADAPEIIQLQALANLGRDLQAMESAEEAVFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTTNEHGNALA
KAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLANIDYSDVSASRAESRLSPHCPAIQVRWLNTDDQTGKEILRDRAAEYCADEIAFALNEAAEG
RLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAQAMEKWRKGGIFAAVQQFAALHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALHKWLNEQISRARSGHFPLDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTDNHETE
LLAKSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPDAGRESVSQSYQSATDVV
EMLKLNWQRFIKNAPENTEFTFTEEAPPETVYQYSRQQDQALSAHSIKRRNFDFIRHTSFTGLSRHTKSSDEQHEPLQPA
IDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEGKWLPTVSTML
DTCRLTPLIGESLSQIPPTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGNVILIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLPKIAIRYLFLRGMDGSDQGIWK
WDINTALLSTFVERKINS

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=558097 KCG55_RS00290 WP_254323043.1 55845..59501(+) (recB) [Neisseria subflava strain HP0015]
ATGTCTTCCGCCCTTCCTTTTGACGCGCTCACACTTTCCATCGACGGCACCAACCTCATCGAAGCTTCCGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTTTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAAGCAGCGACGGCAGAACTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTGTTGCAGGTTTTGAACGAA
ATCCAAACCTTGGGCGGCAAGCCGGAACATATTTCAGACGGCCTGAACAAATATTACGACAAAGAGAAAAAATCTCCCGA
TGACTTTCTCAATCGTTTGATTCCTTTGGCTTTAGGCGAGCAAGACGGACAGGAAAGCTGCCATCGCCTGATTCTCCGCC
TCAAAGCCGCGCTGAGCCAGTTTGACAACGCATCGATTTACACCATCCACGGCTTCTGTCAGCGCGTCTTGCGCGATTAC
GCGTTTTTGTGCGGCGCGCCTTTGGATGTCGAGCTGTCGGACGACTCTCGCGAGAGGCTGCTGATTCCTGCGCAGGATTT
TTGGCGGCAGAAAGTGGCAACCGATGCCACATTGGCACAATTGGTTTTTGACCGGAAATGCACCCCTGAAAAAATGCTTG
CCGAAATCAAAAGCTATACCGGCCGCCCCTATCTGAAATTCAGACGGCCTGAAGGCGATTTGAAAGAAGCCCAAGCCAAC
CTTCAAGAAACATGGCAAAAAGTTTGCGTCCAGTTGGAAGACTTGGAAAAAGCGTTTTGGGCAATTTTTCCCAAACTTAA
CGGCCAAACCTACAAAAGAAAAACCTTTGAAAATGTTTTTACCGATTTAAAAACAAACGCCGAATCCAACCGTCTGCCCC
GCCTGAGCAAACAAACGCTAGAAAAATTAAGCCTCTTCAGTATCGACACGCTCAACAGCAAACTGAAAAAAGAATATAAA
GCCGATGCCGATGCGCCGGAAATTATTCAGCTGCAAGCCTTGGCCAATCTCGGTCGTGATTTGCAGGCAATGGAAAGCGC
GGAAGAAGCGGTCTTCATCTGCCTGCAACTCGACCTCCTTTCCTACATCAACCAATCTATTGCCGAACAAAAAAAATCAC
GCCGCGAGCGCGTGTTTGACGATTTGCTGCTGGACGTCCATCAGGCATTGACCACCAATGAACACGGCAACGCATTGGCA
AAAGCGGCGGCGGCAAACTGGGAAATCGCGCTGATTGACGAATTCCAAGATACCGACCCGCTGCAATACGAAATTTTCCG
CCAAATTTTTATCGAACAAGGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAGCAGGCGATTTACAGCTTTCGCGGTGCGG
ACATTTACGCCTATCTGCAAGCCGCGCAAGATGCGGACAGGCATTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATCAACGGCATCAGCGCCTTGTTCAAACAAAAAAAACACCCCTTCGTGTTGGCAAACATCGATTACAGCGATGTCTC
CGCCAGCCGCGCCGAAAGCCGGCTGTCGCCACACTGCCCCGCCATCCAAGTGCGCTGGCTCAATACGGACGACCAAACCG
GCAAAGAGATTTTGCGCGACCGTGCCGCCGAATATTGCGCCGATGAAATTGCCTTTGCGCTCAATGAAGCAGCCGAAGGC
CGTCTGAACTTCAAAGGCCGCGCGCTGGAATCCGGCGATATTGCCGTCTTGGTGCGCACCAACAACGAAGCGGCAATGAT
TGCCGGAAAACTGAAACAGCGCCGTATCCAAAGCGTGTTGCTGTCGCGCCAGTCCGTTTTCGATTCCGCCGAGGCCGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAAACCGACTGGCTGCGCTTTGTCTTGACCGGCGTTTTGTTC
GGCTATACCGCCAAAGAGATTTACGAACTCAACCACAACGAACACCAGCTGCTGAAATGGCTGGAGTCGTCTGCCCAAGC
CATGGAAAAATGGCGGAAAGGCGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGCCCTACATGACATCGAAACACGCCTGC
TCAAAGGCGGCAACGAACGCAGCCTGACCAACTACTACCAAATTCTGGAGCTTTTGGCCGAAGAAGACAGCCAAAGCCGC
AACCCTGCCGCCCTGCATAAATGGCTGAACGAACAAATCAGCCGTGCGCGCAGCGGCCATTTCCCGTTAGACGCGCAAAC
CATCCGTCTTGAAAGCGATGAAAAATTGGTCAAAATCGTTACCATGCACGCGTCGAAAGGTTTGCAATATCCTTTGGTTT
ACTGCCCCTTCGCGTGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTGCATACTGACAACCACGAAACCGAG
CTGCTGGCCAAATCTCAAACCTCGGAAGCAGAACTAAGCCATCTTGCCGACGAAAAGACGGCAGAAGATTTACGCCTACT
TTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAATATCTACGCCGCCGCCAACAAAAACTGTACGCCAAACAATCCTT
TTGCCTATCTGCTCGAAGGTTTGCCGGATGCCGGCCGCGAAAGCGTCAGCCAAAGCTATCAAAGCGCGACAGACGTTGTG
GAAATGCTCAAGCTCAACTGGCAACGCTTTATCAAAAATGCGCCTGAAAATACGGAGTTTACCTTCACGGAAGAAGCCCC
GCCGGAAACCGTCTACCAATACAGCCGCCAGCAAGACCAAGCCTTGAGCGCACATAGCATTAAACGCCGCAATTTTGACT
TTATCCGCCATACCAGCTTTACCGGTTTGAGCAGGCACACCAAGTCAAGCGACGAGCAACACGAGCCTTTGCAACCTGCC
ATCGACCCGGCAGAAAGCGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCCCACTTTCAGACGGCCTCGATATCCA
CCATTTTCCCCGCGGCACCAATGCCGGCGTATGTTTGCATGAAATGTTGGAAAAACTCGACTTCGCCGCCTCTGCCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTGCAACGCCACAGCTTTGAAGGCAAATGGCTGCCGACGGTAAGCACCATGCTC
GACACCTGCCGCCTGACTCCTTTAATCGGCGAGAGCCTGTCGCAGATTCCGCCGACCCGACGCCTGCCCGAAATGGGGTT
CACCCTGTACATGGACGATTTCAAACTGGACGACTTGCGCCGTTGGTTTGCTTCAAGCGAAGCAAACCTGCCGCCCGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTGCAAGGCTATTTGAACGGCTTTATCGATATGGTTTGCCAAGAT
TCAGACGGCAATGTCATTTTAATCGACTACAAATCCAACCATTTGGGCAACGATGCAAGCGCGTACACGCAACAGGCGAT
GAACGAAGCCGTAGCGCATCATCACTACTACCTGCAAGCCCTGATCTACGCCGTTGCCATTGCGCGCTACTACGCCCTGC
GCGGCAAGCCGTTGCCCAAAATCGCCATCCGCTATCTCTTCCTGCGTGGCATGGACGGCTCGGATCAAGGCATTTGGAAA
TGGGACATCAATACCGCCCTGCTTTCCACTTTTGTTGAGCGGAAAATAAATTCTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(699-842)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(469-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.812

99.097

0.603