Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   L1704_RS00765 Genome accession   NZ_CP091107
Coordinates   86223..87008 (-) Length   261 a.a.
NCBI ID   WP_014570337.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 81223..92008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS00735 (L1704_00735) - 82015..82605 (+) 591 WP_003132255.1 flavin reductase family protein -
  L1704_RS00740 (L1704_00740) - 82641..82943 (-) 303 WP_003132256.1 hypothetical protein -
  L1704_RS00745 (L1704_00745) - 82945..83112 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  L1704_RS00750 (L1704_00750) rpmG 83676..83825 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  L1704_RS00755 (L1704_00755) rpmF 83855..84028 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  L1704_RS00760 (L1704_00760) - 84392..86173 (+) 1782 WP_014570336.1 heavy metal translocating P-type ATPase -
  L1704_RS00765 (L1704_00765) spo0J 86223..87008 (-) 786 WP_014570337.1 ParB/RepB/Spo0J family partition protein Regulator
  L1704_RS00770 (L1704_00770) rarA 87063..88322 (-) 1260 WP_003132263.1 replication-associated recombination protein A Machinery gene
  L1704_RS00775 (L1704_00775) - 88366..88854 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  L1704_RS00780 (L1704_00780) - 89006..89473 (+) 468 WP_003132265.1 DUF3013 family protein -
  L1704_RS00785 (L1704_00785) - 89503..91056 (+) 1554 WP_003132266.1 ABC-F family ATP-binding cassette domain-containing protein -
  L1704_RS00790 (L1704_00790) - 91187..91456 (+) 270 WP_058221497.1 hypothetical protein -
  L1704_RS00795 (L1704_00795) - 91464..91952 (+) 489 WP_003132268.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29729.54 Da        Isoelectric Point: 9.5731

>NTDB_id=558091 L1704_RS00765 WP_014570337.1 86223..87008(-) (spo0J) [Lactococcus lactis subsp. lactis strain UC109]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTTLKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=558091 L1704_RS00765 WP_014570337.1 86223..87008(-) (spo0J) [Lactococcus lactis subsp. lactis strain UC109]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAACTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCATTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

47.656

98.084

0.467