Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   L1704_RS00620 Genome accession   NZ_CP091107
Coordinates   55363..56118 (+) Length   251 a.a.
NCBI ID   WP_058225802.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50363..61118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS00590 (L1704_00590) - 50422..50871 (+) 450 WP_003132211.1 GNAT family N-acetyltransferase -
  L1704_RS00595 (L1704_00595) - 50948..51190 (+) 243 WP_003132213.1 TM2 domain-containing protein -
  L1704_RS00600 (L1704_00600) - 51271..52893 (-) 1623 WP_058221496.1 SulP family inorganic anion transporter -
  L1704_RS00605 (L1704_00605) - 53103..53624 (+) 522 WP_003132215.1 N-acetyltransferase -
  L1704_RS00615 (L1704_00615) - 54089..55264 (+) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  L1704_RS00620 (L1704_00620) recO 55363..56118 (+) 756 WP_058225802.1 DNA repair protein RecO Machinery gene
  L1704_RS00625 (L1704_00625) - 56232..57113 (+) 882 WP_058225803.1 Rgg/GadR/MutR family transcriptional regulator -
  L1704_RS00630 (L1704_00630) - 57345..58595 (+) 1251 WP_003132219.1 radical SAM protein -
  L1704_RS00635 (L1704_00635) - 58601..59836 (+) 1236 WP_003132221.1 MFS transporter -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28731.95 Da        Isoelectric Point: 5.9537

>NTDB_id=558090 L1704_RS00620 WP_058225802.1 55363..56118(+) (recO) [Lactococcus lactis subsp. lactis strain UC109]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECVFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=558090 L1704_RS00620 WP_058225802.1 55363..56118(+) (recO) [Lactococcus lactis subsp. lactis strain UC109]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTATATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGTATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.878

98.008

0.538