Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KCG56_RS09830 Genome accession   NZ_CP073116
Coordinates   2030580..2032112 (+) Length   510 a.a.
NCBI ID   WP_254321299.1    Uniprot ID   A0A9X9HY07
Organism   Neisseria subflava strain TT0073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2025580..2037112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS09810 (KCG56_09850) - 2025761..2026330 (+) 570 WP_254322240.1 L-threonylcarbamoyladenylate synthase -
  KCG56_RS09815 (KCG56_09855) - 2026715..2027155 (-) 441 WP_004519182.1 surface-adhesin E family protein -
  KCG56_RS09820 (KCG56_09860) purB 2027366..2028736 (+) 1371 WP_254321298.1 adenylosuccinate lyase -
  KCG56_RS09825 (KCG56_09865) msrAB 2028868..2030435 (-) 1568 Protein_1894 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  KCG56_RS09830 (KCG56_09870) pilA 2030580..2032112 (+) 1533 WP_254321299.1 signal recognition particle-docking protein FtsY Machinery gene
  KCG56_RS09835 (KCG56_09875) - 2032270..2033166 (-) 897 WP_070461522.1 polyprenyl synthetase family protein -
  KCG56_RS09840 (KCG56_09880) - 2033150..2033377 (-) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  KCG56_RS09845 (KCG56_09885) - 2033513..2035369 (-) 1857 WP_254321300.1 RNB domain-containing ribonuclease -
  KCG56_RS09850 (KCG56_09890) - 2035478..2036398 (-) 921 WP_254321301.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54732.71 Da        Isoelectric Point: 4.2179

>NTDB_id=558090 KCG56_RS09830 WP_254321299.1 2030580..2032112(+) (pilA) [Neisseria subflava strain TT0073]
MFSFFRRKKKQETPAPEEAQVQETAVKVESEVAQVVENIKEDAESLAENVKGHVESVVESAVETVSETVEQVREALTETP
SETVEKVEEHVEAAKEAAVETVSETFEQVQETVAEMPSEATEAAEEAAEQAEAVKEAAVETVSEAVDQVKETVAEMPSEV
AEATEEAAEQAEAVKEAAVEAVSETVEQVQEVIAETPAEAPAPAEEPKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=558090 KCG56_RS09830 WP_254321299.1 2030580..2032112(+) (pilA) [Neisseria subflava strain TT0073]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGTAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAACGTCAAAGGGCATG
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGTAAGCGAAACCGTCGAGCAGGTTCGGGAAGCTTTGACCGAAACGCCG
TCTGAAACAGTCGAAAAAGTAGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCTGTTGAAACCGTCAGCGAGACTTTTGA
ACAGGTTCAAGAAACCGTTGCTGAGATGCCGTCTGAAGCGACCGAGGCCGCTGAGGAAGCAGCAGAACAGGCTGAAGCGG
TAAAAGAAGCGGCCGTTGAAACCGTCAGCGAGGCTGTTGATCAGGTAAAGGAAACCGTTGCCGAAATGCCGTCTGAAGTG
GCCGAGGCTACTGAGGAAGCAGCAGAACAAGCCGAAGCGGTCAAAGAAGCAGCTGTTGAGGCAGTTAGCGAGACTGTCGA
GCAAGTTCAAGAAGTCATTGCGGAAACACCGGCTGAAGCCCCTGCTCCGGCTGAAGAACCCAAACTCAGCTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGCGACAAAATGGCGAAATCGCTGGCAGGCGTGTTCGGCGGAGGACAGATCGAC
GAGGATTTGTACGAAGAGCTGGAGACTGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAACGAATTGCGTGGCGCGCTGAAAGATGCGCTGTACGACT
TGATTAAGCCTCTGGAAAAACCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAATGGC
GCGGGCAAAACCACGTCTATCGGCAAACTCGCCAAATACTTCCAAGCACAGGGCAAATCCGTGTTGCTGGCGGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAGGCTTGGGGCGAACGCAACAATGTGACCGTGATTTCGCAAACTACGG
GCGATTCCGCAGCCGTTTGCTTCGATGCCGTCCAAGCCGCCAAAGCGCGCGGTATCGACATCGTGCTGGCCGATACAGCA
GGCCGTCTGCCGACGCAGCTTCATCTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGTCAAAATGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCGT
TGGGCCTGACTGGCCTTATCGTGACCAAACTCGACGGTACGGCCAAAGGCGGCATCCTCGCCGCCCTTGCCTCCGACCGC
CCAGTTCCTGTCCGCTACATCGGAGTAGGTGAAGGCATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTCGTAGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

73.725

100

0.737