Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   KCG56_RS03475 Genome accession   NZ_CP073116
Coordinates   707750..709513 (+) Length   587 a.a.
NCBI ID   WP_254321919.1    Uniprot ID   A0A9X9HZS9
Organism   Neisseria subflava strain TT0073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 702750..714513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS03455 (KCG56_03470) recR 704522..705127 (+) 606 WP_003679078.1 recombination mediator RecR -
  KCG56_RS03460 (KCG56_03475) - 705190..705477 (-) 288 WP_003683377.1 hypothetical protein -
  KCG56_RS03465 (KCG56_03480) - 705692..706941 (+) 1250 Protein_669 lipoprotein-releasing ABC transporter permease subunit -
  KCG56_RS03470 (KCG56_03485) lolD 706934..707617 (+) 684 WP_254321918.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG56_RS03475 (KCG56_03490) recD 707750..709513 (+) 1764 WP_254321919.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG56_RS03480 (KCG56_03495) - 709609..710808 (+) 1200 WP_254321920.1 hypothetical protein -
  KCG56_RS03485 (KCG56_03500) - 710904..711305 (-) 402 WP_254321921.1 RNA-binding S4 domain-containing protein -
  KCG56_RS03490 (KCG56_03505) - 711510..712468 (+) 959 Protein_674 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  KCG56_RS03495 (KCG56_03510) tilS 712685..713884 (+) 1200 WP_254322211.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64663.73 Da        Isoelectric Point: 5.6449

>NTDB_id=558074 KCG56_RS03475 WP_254321919.1 707750..709513(+) (recD) [Neisseria subflava strain TT0073]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPLILQGRKLF
LGRMWQLEHDLAVEIKRLASAKAEEVNFMAASKSLSDWFDTKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEHPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPDHGFEIKGQPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAENNVAFAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKASGETPWFAGQIIMITHNDYMLEVFNGDIGLIMPDKESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTESEEEARGLDKALLYTAITRARERFVFWGSAEELCQAV
GCHQKRRTALADALEWQFEQSDEQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=558074 KCG56_RS03475 WP_254321919.1 707750..709513(+) (recD) [Neisseria subflava strain TT0073]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGTGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTCGATGCCTTAAGCAACTTGCCGAACTTAGTCGGTAATGCGGATAAACCGCTTATCCTGCAAGGCCGGAAATTGTTT
TTGGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCCAGTGCCAAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATACTAAAGACAGTAAAGAGCAACGGGATGCTGCGGCTTTGG
CATTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGTAAGACGACGACCGTAGCAAAGCTTTTGGGTCTG
ATTTGTAATAACAGTACGAAGCTGCCCCGTATCGCTTTGGCGGCGCCGACAGGCAAAGCGGCTGCGCATATGGCACGAGC
TTTGCAGCGTGCTTTGGATGGTTTTGATTTGTCCCCAAGTATCAAAGCGCATTTGGAAAACTTGGAAGGGCAGACTGTTC
ATCGATTGTTAAAACTGAGGCCGCCGCAAATGCGCCCTGCGTTCAATCATGAACATCCGCTTGCATTGGATGTTTTGGTG
GTGGATGAGGCGTCAATGTTGGATTTGCCGCTGGTGTTGGATTTGTTGCGTGCCGTGCCGACCGGTTGTCGTTTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGCTTGGGAGCCGTGTTGGCGGCATTATCGCGTCCGACAGCTTTGGATA
AAGAAACTGCTGAAAAGCTGGAAGTGTACCTGCCCGATCATGGCTTTGAGATTAAAGGGCAGCCACAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGTGCAGACAGCGGTATCGGCTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAATTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TCGCCTTGCTGTATCAAAAGCAACAGGATTATTGGCAGGCCGTGGCAGAGAATAATGTTGCATTCGCCTATGGTCATGCG
GCCGATGTGGTGGTATTGGCAGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACTTGCAACGACA
AGGCAAGGCTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACGCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGCCGGATAAAGAATCGTTGAATGGTTTGTCTGCATATTTTCCTGAGAAAGATGGA
TTTAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCATAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCGCCGTCAGTACCTGCAACGACGGAAAGCGAAGAGGAAGCCCGAGGTTTGGATAAGG
CTTTGCTTTACACGGCCATTACCCGTGCGCGTGAACGTTTTGTATTTTGGGGAAGTGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCATCAAAAACGCAGGACGGCATTGGCCGATGCCTTGGAATGGCAGTTTGAACAGTCTGATGAGCAGGCTTCCGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_19)

(127-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.925

98.296

0.579