Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   KCG56_RS01125 Genome accession   NZ_CP073116
Coordinates   256934..258973 (+) Length   679 a.a.
NCBI ID   WP_254322197.1    Uniprot ID   A0A9X9I0K1
Organism   Neisseria subflava strain TT0073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 251934..263973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS01110 (KCG56_01125) grxC 252664..252921 (+) 258 WP_003684090.1 glutaredoxin 3 -
  KCG56_RS01115 (KCG56_01130) secB 252943..253377 (+) 435 WP_003745844.1 protein-export chaperone SecB -
  KCG56_RS01120 (KCG56_01135) - 253641..256685 (+) 3045 WP_070713421.1 TonB-dependent receptor -
  KCG56_RS01125 (KCG56_01140) recG 256934..258973 (+) 2040 WP_254322197.1 ATP-dependent DNA helicase RecG Machinery gene
  KCG56_RS01130 (KCG56_01145) gdhA 259044..260378 (-) 1335 WP_070584291.1 NADP-specific glutamate dehydrogenase -
  KCG56_RS01135 (KCG56_01150) - 260792..261586 (+) 795 WP_254321629.1 thymidylate synthase -
  KCG56_RS01140 (KCG56_01155) - 261645..263084 (-) 1440 WP_254321630.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 74831.59 Da        Isoelectric Point: 6.9757

>NTDB_id=558066 KCG56_RS01125 WP_254322197.1 256934..258973(+) (recG) [Neisseria subflava strain TT0073]
MTPETQKQLKITDVSAKKLDKLNLNTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPVYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLHLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAA
ALGGDGTLTQALRHALPFALTDAQEKVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGAVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLAQLQAALPELNIGLVHGRMKAAEKAEVMADFAAGRLSVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFTEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=558066 KCG56_RS01125 WP_254322197.1 256934..258973(+) (recG) [Neisseria subflava strain TT0073]
ATGACTCCCGAAACCCAAAAACAGCTCAAAATCACCGACGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCAACACCGC
ATGGGATTTGGTTTTGCATCTGCCGCTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCGGCG
TGCCGTGTCAGGTTGAGGGCGAGGTCATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATCGTTCAAATTGCC
GACGGTTCCGGCAGCGTCCTTTTTTTGCGTTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAACG
CATCCGAGCCGTGGGCGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCATCCCAAAATACGCGATGCCGAAAGCA
GCGGTTTGGCGGAAAGCCTCACGCCCGTTTATCCGACCGTAAACGGCCTGAACCAGCCCACATTGCGCCGTATCATTCAG
ACGGCGTTAGACGTTACGCCGCTGCACGACACTTTGCCTGATGCTTTATTAGGCCGTCTGAAACTGCCACACCTTGCCGA
AAGCCTGCATCTTCTGCACTCGCCGCCGCCGAGTTTCACCATTCACCAGCTTTCCGACGGCGCGCTGCCCGCATGGCAGC
GGCTTAAATTCGACGAACTTTTGGCGCAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGTGTCAGCGGTACGGCGGCG
GCATTGGGTGGCGACGGCACGCTGACCCAAGCACTGCGCCATGCGTTGCCGTTTGCCCTGACTGATGCACAAGAAAAAGT
TGTTTCCGAAATCCGCCGCGACATGGCGCAAACCCACCCCATGCACCGCTTGCTGCAAGGTGATGTCGGCAGCGGCAAAA
CCATCGTCGCCGCCTTGTCCGCGCTGACCGCCATTGAGTCCGGCGCACAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCACTTCATCAAGTTCAAACAATGGCTTGAGCCGTTGGGCCTTGAAGTCGTCTGGCTCTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCGCTGTCAAAATCGCCGTCGGCACGCACGCCCTGTTTT
CAGACGACGTCGAGTTCCAAAATCTCGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGACGCGACGTCCACCAGCTGATGATGTCCGCCACCCCCATCCCGCGCACGCTCGCCATGAGTTTTTT
CGCCGACTTGGATGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTTAATATTTGTCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTAGCCCAGCTTCAGGCAGCCTTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAGGCCGCTGAAAAAGCCGAAGTCATGGCGGATTTTGCCGCAGGCCGTCTGAGCGTCTTGG
TCGCCACCACCGTTATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGTCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTACCGAACC
TTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGTCAAGACCTCA
ACATCCGTGGTCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGTGTTCCCATGCTGCGCTTCGCCAACCTCGAAGAAGAC
TTACACCTCTTGGAACAAGCGCGCGAAATCGCCCCTTTGTTGATTGAACAAAACCCTGAAATCGTCGAAGCGCATTTGGC
GAGATGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

DEAD/DEAH box helicase (DEAD)

(261-418)

RecG wedge domain (RecG_wedge)

(14-163)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.667

100

0.937