Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KCG56_RS01075 Genome accession   NZ_CP073116
Coordinates   245516..245977 (-) Length   153 a.a.
NCBI ID   WP_254321625.1    Uniprot ID   A0A9X9HYZ2
Organism   Neisseria subflava strain TT0073     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 240516..250977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS01045 (KCG56_01060) - 240532..241268 (+) 737 Protein_200 toxin-antitoxin system YwqK family antitoxin -
  KCG56_RS01050 (KCG56_01065) - 241317..241877 (-) 561 WP_063067949.1 adenine phosphoribosyltransferase -
  KCG56_RS01055 (KCG56_01070) gmk 242069..242662 (+) 594 WP_254322196.1 guanylate kinase -
  KCG56_RS01060 (KCG56_01075) rpoZ 242715..242921 (+) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  KCG56_RS01065 (KCG56_01080) - 243026..245182 (+) 2157 WP_254321624.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KCG56_RS01070 (KCG56_01085) - 245279..245440 (-) 162 WP_039861975.1 hypothetical protein -
  KCG56_RS01075 (KCG56_01090) recX 245516..245977 (-) 462 WP_254321625.1 recombination regulator RecX Regulator
  KCG56_RS01080 (KCG56_01095) - 246077..246790 (-) 714 WP_254321626.1 phosphoglycolate phosphatase -
  KCG56_RS01085 (KCG56_01100) - 247212..248477 (+) 1266 WP_039861976.1 Glu/Leu/Phe/Val dehydrogenase -
  KCG56_RS01090 (KCG56_01105) - 248638..249453 (+) 816 WP_070607922.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG56_RS01095 (KCG56_01110) purN 249550..250176 (+) 627 WP_254321627.1 phosphoribosylglycinamide formyltransferase -
  KCG56_RS01100 (KCG56_01115) - 250207..250875 (+) 669 WP_254321628.1 DUF3108 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17933.16 Da        Isoelectric Point: 8.0020

>NTDB_id=558065 KCG56_RS01075 WP_254321625.1 245516..245977(-) (recX) [Neisseria subflava strain TT0073]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCREFLPDREDELQTAISVLRKKFKREAQDLKEKQKQARFLAYRGFGADTIQTALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=558065 KCG56_RS01075 WP_254321625.1 245516..245977(-) (recX) [Neisseria subflava strain TT0073]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTCGGCTTGAAACG
CAAACTGGCCCCGCATGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGTAAGAGCAACCGTTACGGCACGCTCCGCCTCAAGCAAGCTTTGGCGCAA
CAAGGTATCGATGCAGACGACTGTCGGGAGTTCCTACCCGATAGGGAGGACGAGCTGCAAACCGCCATTTCCGTCTTGCG
TAAAAAATTCAAGCGAGAAGCTCAAGATTTGAAAGAAAAACAAAAACAGGCGCGTTTTCTTGCCTATCGCGGTTTTGGTG
CCGACACCATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

78.378

96.732

0.758