Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   KCG56_RS00335 Genome accession   NZ_CP073116
Coordinates   84469..87768 (+) Length   1099 a.a.
NCBI ID   WP_254321544.1    Uniprot ID   A0A9X9N3A9
Organism   Neisseria subflava strain TT0073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79469..92768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS00315 (KCG56_00340) - 80083..80403 (-) 321 WP_254321540.1 accessory factor UbiK family protein -
  KCG56_RS00320 (KCG56_00345) - 80528..81592 (-) 1065 WP_254321541.1 DUF1176 domain-containing protein -
  KCG56_RS00325 (KCG56_00350) metK 81764..82933 (-) 1170 WP_254321542.1 methionine adenosyltransferase -
  KCG56_RS00330 (KCG56_00355) - 83326..84201 (+) 876 WP_254321543.1 lysophospholipid acyltransferase family protein -
  KCG56_RS00335 (KCG56_00360) recC 84469..87768 (+) 3300 WP_254321544.1 exodeoxyribonuclease V subunit gamma Machinery gene
  KCG56_RS00340 (KCG56_00365) - 87772..88278 (+) 507 WP_254321545.1 thioredoxin family protein -
  KCG56_RS00345 (KCG56_00370) lapB 88393..89561 (-) 1169 Protein_62 lipopolysaccharide assembly protein LapB -
  KCG56_RS00350 (KCG56_00375) - 89587..89910 (-) 324 WP_070589943.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  KCG56_RS00355 (KCG56_00380) ilvE 90125..91123 (+) 999 WP_254321546.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 124770.34 Da        Isoelectric Point: 4.6498

>NTDB_id=558063 KCG56_RS00335 WP_254321544.1 84469..87768(+) (recC) [Neisseria subflava strain TT0073]
MFYLFQSDRLESLAEMCARIHQASPLDSVLAQEEVVVQSQGMRRYLNMFFARELGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEEGEADGQQALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQKNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
TVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
EPANVEIWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAGFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPQAEAQPFFLEALS
QDEPGKTIHQGELVSFWRNPVKVWLKKNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARRTGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDAELIRSNKRPSEPYEAHFDDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEHLIF
CAVAPKSVANRQTYIVSLGQTETYAAIGQEAARGFLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYSKKEEWDAALRKAHD
VFNGSKMSKGQKEYTEVKLVFGHSEESPLDEPLFENLVVNLLVPLLTGVAGKTDTTEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=558063 KCG56_RS00335 WP_254321544.1 84469..87768(+) (recC) [Neisseria subflava strain TT0073]
ATGTTTTATCTCTTTCAATCCGACCGTTTGGAATCGCTTGCCGAAATGTGCGCACGTATTCATCAGGCTTCGCCCTTGGA
TTCTGTATTGGCGCAGGAAGAAGTGGTGGTGCAAAGCCAGGGGATGCGGCGTTATCTGAATATGTTTTTCGCGCGCGAAC
TCGGCGTGGCAGCGAATTTGAAGTTCAGCCTGCCTGCCGGTTTGGCGTGGCAGCTGATGCGCAAATTGGTTCCCGATGTG
CCGCCGCTCAGTCCGTTTTCGCCTGAAGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGTGAGGCGTTTCAGACGGC
CCCGGAATACGAAAACGTACGCTTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCAGCAGATTATCAGCTTGCCGGAC
AGATGGCGGATATTTTCGACCAATATTTGGTGTACCGACCGGATTGGATTGATGCGTGGCAGGCTGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGACGGCAGCCAATCTGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGCTGTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTGTTCGTATTCGGCATTTCGACAATGG
CGCCGATGTATCTGCAACTGTTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCACTCAACCCGAGCAGCCAA
TATTGGGGCGAAGTTATCGACGAGGCGCAGATTTTGAAAAGGGGTGATGAGGCGGACTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGGCGCGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTATTGCATTGCCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTG
TATCAACAGGAAGAAGGCGAAGCAGACGGGCAACAGGCTTTGGTTCAGGTTCACGATGCGGACGGCAATCCAGTGTGTGT
CGAGCCGGACAAGCTGTTGAATGACGGCTCCGTCAAAATCGTCGCAGCACACAGCCCTTTACGCGAATTGCAGATTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAAAAATCCCGACTGGCAGCCGCACGATATTGCCGTTTTAACGCCGAACATTGAG
CCGTACAGTCCGTTTATCGAAGCTGTTTTTGGACAGGAGCAGGCAGGCAGCCAGGCTTTGCCGTATTCGATTTCGGATGT
GAAACTCAGCCGCCGCCAGCCGTTGCTGTATGCTTTGGCGCAAACTTTGGACTTGCTGGAAAGCCGGTTTGAAGTGGACA
AGGTTTTGCCTTTGCTGGAAAGCCGGTTGGTGTTGCAACGCTTCGGTTTGAGTGAGGAAGATGTGCCGCTGCTGCATGAG
ACTGTTGCCGGATTAAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGCAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCTTTGGGCTGGATGCTGCCCGAAGGTGGCAACGGTATGTGGCAGGGCGTGAGCGCGTGGCATA
GCAACGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGCAA
GAGCCTGCTAATGTGGAAATCTGGGTGCAGCGTTGCCGCGATTTACTGGAGAAACTGTTTGCTCCGGATACGGATGACCA
ATACGCCAAGCAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGGATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATCACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGTTGGGTTTGAATGACGGCGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTTGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGTT
ACCTCTTCCTCGAAGCCTTAATCAGCGCACGTGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTTGCGCCCTCTTCGTTAATCAGCGAGCTGCTGGATACCATTGCTGCCATGACGGGGAAAAGCGGGCGCGAGTTATC
GGAGAAATGGGTGAAACATCATCCTTTGCAGGCGTTTTCGCGCCGTTATTTCCAAAAGGATGCGCTTTCAGACGGCCTTT
TCAGTACGCGCCAAGATTACGCCGATGCGTTGAACCAACCGCAAGCGGAAGCGCAGCCGTTTTTCCTTGAGGCCTTAAGT
CAGGATGAGCCGGGCAAAACCATTCATCAGGGTGAGCTCGTCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAAGAA
AAATTTAAGCTGGGATCAGCCGTATCTGGACGGCGCATGGGAGTCTGCCGAACCGTTTGAGCCGCAACATGAAGGTCGGA
TTGCCGATGCCTATTTGGATGCGCGGCGCACAGGGGAAGATTTTGAAGATACAGCCATTCGGTTGAATGCCGAAAGCCTG
ATGCCGGTAGGTGAATTGGGTGGTTTGTGGCAGAAGCAGTATCAAATATCTGCGAAAAACGTGGATGCCGAGCTGATACG
CAGTAACAAAAGGCCGTCTGAACCTTATGAGGCACACTTTGACGACTTGGTGTTACAAGGCACCATCGGCAATCTTTATG
AATGCGGCCGCATTGTGTTCCTAAACCAAAAAGACAATGCACCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCGTCGCCCCTAAATCCGTTGCAAACCGACAAACCTATATTGTCAGCTTGGGACAAACCGAAACCTATGCCGCCAT
CGGGCAAGAGGCCGCGAGGGGGTTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGCCTTGCCGCTGCGGAGGAGTACAGCAAGAAAGAGGAATGGGATGCTGCCTTGAGAAAAGCCCATGAT
GTTTTTAACGGCAGCAAAATGAGCAAAGGGCAGAAGGAATATACCGAAGTGAAGCTGGTGTTTGGCCATTCGGAAGAATC
GCCTCTTGATGAGCCGCTATTTGAAAACCTCGTCGTCAATCTGCTTGTTCCGCTTTTGACCGGCGTGGCAGGGAAAACCG
ATACAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(807-1024)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

65.306

98.089

0.641