Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KCG54_RS08045 Genome accession   NZ_CP073115
Coordinates   1661192..1661653 (+) Length   153 a.a.
NCBI ID   WP_049329865.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1662138..1663145 1661192..1661653 flank 485


Gene organization within MGE regions


Location: 1661192..1663145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS08045 (KCG54_08095) recX 1661192..1661653 (+) 462 WP_049329865.1 recombination regulator RecX Regulator
  KCG54_RS08050 (KCG54_08100) - 1661729..1661890 (+) 162 WP_049344044.1 hypothetical protein -
  KCG54_RS08055 (KCG54_08105) - 1662138..1663145 (-) 1008 WP_254323886.1 IS5 family transposase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17905.10 Da        Isoelectric Point: 7.1699

>NTDB_id=558044 KCG54_RS08045 WP_049329865.1 1661192..1661653(+) (recX) [Neisseria subflava strain TT0077]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCREFLPDREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQTALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=558044 KCG54_RS08045 WP_049329865.1 1661192..1661653(+) (recX) [Neisseria subflava strain TT0077]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCTCGTCAGGAAGTCAGCCGTGTCGGCTTGAAACG
CAAACTGGCTCCGCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAAAGCAACCGTTACGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGCATCGATGCAGACGACTGTCGGGAGTTCCTACCCGACAGGGAGGACGAGCTGCAAACCGCTATTTCCGTCTTGCG
TAAAAAATTCAAGCAAGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCACGTTTCCTTGCTTATCGCGGCTTTGGTG
CCGACACCATTCAGACGGCCTTAAAAACGGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

78.378

96.732

0.758