Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   KCG54_RS07995 Genome accession   NZ_CP073115
Coordinates   1648196..1650235 (-) Length   679 a.a.
NCBI ID   WP_254325005.1    Uniprot ID   A0A9X9HWG0
Organism   Neisseria subflava strain TT0077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643196..1655235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS07985 (KCG54_08035) - 1645588..1646382 (-) 795 WP_254323883.1 thymidylate synthase -
  KCG54_RS07990 (KCG54_08040) gdhA 1646797..1648131 (+) 1335 WP_003745850.1 NADP-specific glutamate dehydrogenase -
  KCG54_RS07995 (KCG54_08045) recG 1648196..1650235 (-) 2040 WP_254325005.1 ATP-dependent DNA helicase RecG Machinery gene
  KCG54_RS08000 (KCG54_08050) - 1650484..1653528 (-) 3045 WP_254325006.1 TonB-dependent receptor -
  KCG54_RS08005 (KCG54_08055) secB 1653788..1654222 (-) 435 WP_003745844.1 protein-export chaperone SecB -
  KCG54_RS08010 (KCG54_08060) grxC 1654243..1654500 (-) 258 WP_003684090.1 glutaredoxin 3 -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75052.86 Da        Isoelectric Point: 6.8160

>NTDB_id=558043 KCG54_RS07995 WP_254325005.1 1648196..1650235(-) (recG) [Neisseria subflava strain TT0077]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSILFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAA
ALGGDGTLTQALRHALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGSVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRTEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQTALPELSIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLERWLASREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=558043 KCG54_RS07995 WP_254325005.1 1648196..1650235(-) (recG) [Neisseria subflava strain TT0077]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCCAAGAAGCTTGAAAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCGGCG
TGCCGTGTCAGGTTGAGGGCGAGGTCATTCATCAGGAAGTAACTTTTAAGCCGCGCAAGCAGCTGATTGTTCAAATCGCC
GATGGTTCCGGCAGCATCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAGCG
CATCCGTGCCGTAGGCGAAATCAAGCACGGGTTTCACGGCGACGAGATGATTCACCCTAAAATTCGCGATGCCGAGAGCA
GTGGTTTGGCAGAAAGCCTCACGCCGATTTATCCGACTGTAAACGGTTTGAACCAGCCTACATTGCGCCGTATTATTCAG
ACGGCCTTGGACGTTACGCCGTTGCACGATACCTTACCCGATGCTTTATTAGGCCGTCTGAAACTGCCGCACCTTGCCGA
AAGCCTGCGCCTTTTGCACTCGCCGCCGCCGAGCTTCACCATTCATCAACTTTCAGACGGTACGCTGCCTGCATGGCAGC
GACTCAAATTCGACGAACTTTTGGCACAACAGTTGTCCATGCGGCTGGCGCGACAGAAGCGCGTCAGCGGCACCGCGGCA
GCATTGGGTGGCGACGGTACGTTGACTCAAGCCCTGCGCCATGCCTTACCGTTTGCCCTGACCGATGCGCAAGAAAAAGT
TGTTTCCGAAATCTGCCGAGACATGGCGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATCGTCGCCGCCTTGTCCGCGCTGACCGCCATTGAATCTGGCGCGCAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCACTTCATCAAGTTCAAACAATGGCTTGAGCCGTTAGGTCTTGAAGTCGTTTGGCTCTCCGGTAGTCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTTGCTGACGGCTCTGTCAAAATCGCCGTCGGTACGCACGCCCTGTTTT
CAGACGACGTCGAGTTTCAAAATCTGGGCTTGGTGATTGTGGATGAACAACACCGTTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGGCGCGACGTCCATCAGCTGATGATGTCCGCCACGCCCATTCCGCGCACGCTTGCCATGAGTTTCTT
CGCCGATTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACCCCGATTAAAACACGCCTCGTCAACAACGTCC
GCCGCACCGAAGTCGAAGGCTTCGTCCTCAATATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGTCCGCTGATTGAA
GAGAGCGAAACCCTGCAACTGCAAACCGCCACTGAAACCCTCGAGCAGCTTCAGACGGCCTTGCCCGAACTCAGCATCGG
CTTGGTACACGGGCGCATGAAGGCTGCCGAAAAAGCCGAAGTCATGGCGGAATTTGCGGCAGGTCGTCTGAACGTCTTGG
TCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGGCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGATCTCA
ACATCCGCGGCCCCGGCGAGTTTCTCGGCGCGCGTCAAAGCGGCGTCCCCATGCTGCGTTTCGCCAACCTCGAAGAAGAC
CTGCACCTCTTGGAACAAGCGCGCGAAATCGCCCCCTTGCTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATCTGGA
AAGGTGGCTTGCCAGCAGGGAAGGGTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

RecG wedge domain (RecG_wedge)

(14-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.667

100

0.937