Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   KCG54_RS06225 Genome accession   NZ_CP073115
Coordinates   1289427..1291190 (-) Length   587 a.a.
NCBI ID   WP_254323692.1    Uniprot ID   A0A9X9N0V4
Organism   Neisseria subflava strain TT0077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1284427..1296190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS06205 (KCG54_06255) tilS 1285055..1286383 (-) 1329 WP_049322762.1 tRNA lysidine(34) synthetase TilS -
  KCG54_RS06210 (KCG54_06260) - 1286472..1287431 (-) 960 WP_254323690.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  KCG54_RS06215 (KCG54_06265) - 1287635..1288036 (+) 402 WP_049322760.1 RNA-binding S4 domain-containing protein -
  KCG54_RS06220 (KCG54_06270) - 1288131..1289330 (-) 1200 WP_349306428.1 hypothetical protein -
  KCG54_RS06225 (KCG54_06275) recD 1289427..1291190 (-) 1764 WP_254323692.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG54_RS06230 (KCG54_06280) lolD 1291323..1292006 (-) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG54_RS06235 (KCG54_06285) - 1291999..1293249 (-) 1251 WP_254323693.1 lipoprotein-releasing ABC transporter permease subunit -
  KCG54_RS06240 (KCG54_06290) - 1293464..1293751 (+) 288 WP_003683377.1 hypothetical protein -
  KCG54_RS06245 (KCG54_06295) recR 1293814..1294419 (-) 606 WP_254323694.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64863.08 Da        Isoelectric Point: 5.3070

>NTDB_id=558035 KCG54_RS06225 WP_254323692.1 1289427..1291190(-) (recD) [Neisseria subflava strain TT0077]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPLILQDRKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDTKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSVKAHLENLEGQTVHRLLKLRPPQMRPAFNHEYPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPNHGFEIKGQPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKPGRLKEQVALLYQKQQDYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVLGEMPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTESEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALKWQFEEPDEQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=558035 KCG54_RS06225 WP_254323692.1 1289427..1291190(-) (recD) [Neisseria subflava strain TT0077]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGTGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTTGATGCCTTAAGCAACTTGCCGAATTTGGTCGGCAATGCGGATAAACCACTTATCCTGCAAGACCGGAAATTGTTT
TTAGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCAAGTGCCGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATACTAAAGATAGCAAAGAGCAACGGGATGCTGCGGCTTTGG
CCTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACAGGTAAGACGACAACCGTCGCAAAGCTTTTGGGCCTG
ATTTGTAATAACAGTACGAAGTTGCCCCGTATCGCGTTGGCGGCACCGACGGGCAAAGCGGCTGCGCATATGGCACGGGC
TTTGCAACGTGCTTTGGACGGTTTTGATTTGTCTCCGAGCGTCAAAGCGCATCTGGAAAACTTGGAAGGGCAGACTGTCC
ATCGTTTGTTGAAACTGCGTCCGCCGCAAATGCGCCCTGCGTTCAATCATGAATATCCGCTTGCATTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTATTGGATTTATTGCGCGCCGTGCCGACCGGTTGTCGTTTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGGTTAGGAGCCGTATTGGCGGCATTGTCGCGTCCAACGGCTTTGGATA
AAGAAACCGCTGAAAAGCTGGAAGTGTACCTGCCCAATCATGGCTTTGAGATAAAAGGGCAGCCACAGGCTTTATCACAA
AACAATGCCAAATTGACGTTCAGTCACCGTTTTGGTGCAGACAGCGGTATCGGCTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAATTGGAAATGAAACCAGGCCGTCTGAAAGAGCAGG
TTGCTTTACTGTATCAAAAGCAACAGGATTATTGGCAGGCCGTGGCAGAGAATAATGTTGCACTTGCCTATGGTCATGCT
GCCGATGTAGTGGTATTGGCAGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACCTGCAACGACA
AGGAAAAGTTTTGGGCGAAATGCCTTGGTTTGCCGGACAAATCATCATGATTACGCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCCTATTTTCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCGGATTTTGAATCGGCTTTTGCTATGACTGTGCACAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTACCTCCGTCAGTGCCTGCAACGACGGAGAGTGAAGAAGAGGCTCGAGGTTTAGATAAGG
CTTTGCTTTACACAGCCATTACCCGCGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCATCAAAAACGCAGGACGGCATTGGCCGATGCCTTGAAATGGCAGTTTGAAGAGCCTGATGAGCAGGCTTCCGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_30)

(124-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.579

98.296

0.576