Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   KCG54_RS03975 Genome accession   NZ_CP073115
Coordinates   823060..824205 (+) Length   381 a.a.
NCBI ID   WP_254324726.1    Uniprot ID   A0A9X9HV91
Organism   Neisseria subflava strain TT0077     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 818060..829205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS03940 (KCG54_03955) - 818318..818917 (+) 600 WP_254324722.1 Maf family protein -
  KCG54_RS03945 (KCG54_03960) rsmA 819006..819785 (+) 780 WP_254324723.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  KCG54_RS03950 (KCG54_03965) - 819793..820116 (+) 324 WP_107848714.1 hypothetical protein -
  KCG54_RS03955 (KCG54_03970) - 820116..820844 (+) 729 WP_003747231.1 amino acid ABC transporter ATP-binding protein -
  KCG54_RS03960 (KCG54_03975) - 820908..821267 (+) 360 WP_049322913.1 hypothetical protein -
  KCG54_RS03965 (KCG54_03980) - 821272..821724 (+) 453 WP_254324724.1 protein YgfX -
  KCG54_RS03970 (KCG54_03985) folC 821763..823046 (+) 1284 WP_254324725.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  KCG54_RS03975 (KCG54_03990) tpc 823060..824205 (+) 1146 WP_254324726.1 cell division protein FtsN Machinery gene
  KCG54_RS03980 (KCG54_03995) - 824198..824731 (+) 534 WP_063068803.1 CvpA family protein -
  KCG54_RS03985 (KCG54_04000) purF 824884..826428 (+) 1545 WP_254324727.1 amidophosphoribosyltransferase -
  KCG54_RS03990 (KCG54_04005) greB 826503..826994 (+) 492 WP_254324728.1 transcription elongation factor GreB -
  KCG54_RS03995 (KCG54_04010) - 827082..827789 (-) 708 WP_254324729.1 SIMPL domain-containing protein -
  KCG54_RS04000 (KCG54_04015) - 827902..828393 (-) 492 WP_063068729.1 DUF1841 family protein -
  KCG54_RS04005 (KCG54_04020) ftsB 828495..828770 (-) 276 WP_254324730.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41817.84 Da        Isoelectric Point: 9.9049

>NTDB_id=558031 KCG54_RS03975 WP_254324726.1 823060..824205(+) (tpc) [Neisseria subflava strain TT0077]
MSDNKQKETPNGYDLDGYEQLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQTQVKTADEPSKAVVLE
PNKEDVAMAEEAARHADAEAQSKPQNAGDEEDNAPVEVLKPNRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAARKAQAQQEADEKENALAAKKRALQARAEKAEREAAAERNKLAQLEKAEKAIAERKS
AKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKPETAKTEKADKVKTAEKPSEKAKPKAEKEKAEAKPAKKAAIQAGYAEKE
RAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=558031 KCG54_RS03975 WP_254324726.1 823060..824205(+) (tpc) [Neisseria subflava strain TT0077]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACAACTCAAACGCCGCAACCGCCG
CCGCTTGGTTTTGGCCTCCGGCTTGGTGGTGGCTTCAGGTATGCTGTTCGGTCTGGCGCTGACATCGGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCCCCTGTCGGTCAGACTCAAGTCAAAACGGCGGATGAGCCTAGCAAGGCTGTTGTCCTAGAG
CCGAATAAAGAGGATGTTGCGATGGCTGAAGAAGCAGCCCGCCATGCGGATGCCGAAGCGCAAAGCAAACCTCAAAATGC
CGGCGATGAAGAAGACAATGCGCCGGTTGAAGTATTGAAGCCAAACCGTGAATCTGCTCCCGAAGATGTCGGCGAGCCGT
TGGTTTTGATCAACGATACTTTGGATGACGGCAATATTAAAGGTTTGGAAGAGTCTGAGCGTATTCAACGAGCTGAGGCC
GCCAAACGCGAAGCTGCCGAACGCCGAGCCGAAGAACGCCGCCAACGCCAGGCAGAACAACGTGCTGCGGCACGCAAGGC
ACAAGCCCAACAGGAAGCGGATGAAAAAGAAAACGCATTGGCTGCTAAAAAACGCGCACTTCAAGCGCGTGCTGAAAAAG
CAGAGCGTGAAGCCGCTGCCGAACGCAATAAATTGGCACAATTGGAAAAAGCAGAGAAAGCCATTGCTGAGCGTAAATCT
GCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAACCTGCCAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAAAAA
TGAAAAAGCTAAACCAGAAACGGCCAAAACAGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAGCCA
AACCTAAAGCTGAAAAAGAAAAAGCAGAAGCCAAACCTGCGAAAAAAGCCGCCATTCAGGCTGGTTATGCTGAAAAAGAA
CGTGCGCAAAGCCTGCAACGTAAAATGAAAGCCGCAGGTATCGACTCGACCATTACTGAAGTGATGACCGATAAAGGTAA
GGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCAGAGCGCGATTTGAACAAATTGCGTGTACATGGCA
TTGCCGGTCAGGTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(308-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.618

100

0.512