Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KCG54_RS03675 Genome accession   NZ_CP073115
Coordinates   758887..760263 (-) Length   458 a.a.
NCBI ID   WP_049322871.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 753887..765263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS03650 (KCG54_03665) - 755760..756377 (-) 618 WP_254324685.1 4'-phosphopantetheinyl transferase superfamily protein -
  KCG54_RS03655 (KCG54_03670) - 756430..756942 (-) 513 WP_254324686.1 hypothetical protein -
  KCG54_RS03665 (KCG54_03680) - 757315..757875 (+) 561 WP_049332414.1 pseudouridine synthase -
  KCG54_RS03670 (KCG54_03685) - 757931..758737 (-) 807 WP_254324687.1 DUF4198 domain-containing protein -
  KCG54_RS03675 (KCG54_03690) radA 758887..760263 (-) 1377 WP_049322871.1 DNA repair protein RadA Machinery gene
  KCG54_RS03680 (KCG54_03695) - 760359..761831 (-) 1473 WP_254324688.1 S41 family peptidase -
  KCG54_RS03685 (KCG54_03700) - 762046..763941 (-) 1896 WP_254324689.1 peptidoglycan DD-metalloendopeptidase family protein -
  KCG54_RS03690 (KCG54_03705) - 764115..764660 (+) 546 WP_070608127.1 CreA family protein -
  KCG54_RS03695 (KCG54_03710) - 764691..765239 (+) 549 WP_049322876.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49302.72 Da        Isoelectric Point: 7.0601

>NTDB_id=558029 KCG54_RS03675 WP_049322871.1 758887..760263(-) (radA) [Neisseria subflava strain TT0077]
MAKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=558029 KCG54_RS03675 WP_049322871.1 758887..760263(-) (radA) [Neisseria subflava strain TT0077]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGCTCCGAATGCGGTGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCCTTGCCGCGCCTGAGCCGAAAAATGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTATCCGCCGTTACCGCCACAGAAGTGCCGCGCAATCCGACCGGCATGGGAGAACTTGAC
CGCGTATTGGGCGGCGGTTTGGTAGACGGCGCAGTCATCCTGCTCGGTGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAGCGTTTGGAATTGCCCACAGAAGGCGTGAACCTGCTTGCTGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTGGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGCGCCGCCCAACTGACGCGTATGGCAAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGATGGCGCGATTGCCGGCCCGCGCGTACTGGAGCACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAATTGGGCGTATTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTCTGGTCGAAATTCAGGCATTGGTCGATGACGCACACGGCTTTACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGCCACGGCGGTATCGC
CTGCTTCGACCAAGATGTGTTCCTCAATGCCGTCGGTGGCGTCAAAATCGGTGAACCCGCCGCCGACCTTGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCCATGCCCGAAAAAACCGTCGTATTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCTGTTGCACGCGGGCAAGAGCGACTTAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAATTTCCAAATCTAAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCGATTGACGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis NCTC 12261

47.149

99.563

0.469
  radA Streptococcus pneumoniae Rx1

47.345

98.69

0.467
  radA Streptococcus pneumoniae D39

47.345

98.69

0.467
  radA Streptococcus pneumoniae R6

47.345

98.69

0.467
  radA Streptococcus pneumoniae TIGR4

47.345

98.69

0.467
  radA Streptococcus mitis SK321

47.228

98.472

0.465