Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   KCG54_RS02255 Genome accession   NZ_CP073115
Coordinates   455566..458865 (+) Length   1099 a.a.
NCBI ID   WP_254324526.1    Uniprot ID   A0A9X9HVG1
Organism   Neisseria subflava strain TT0077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 450566..463865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS02230 (KCG54_02245) - 451117..451437 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG54_RS02235 (KCG54_02250) - 451563..452627 (-) 1065 WP_254324523.1 DUF1176 domain-containing protein -
  KCG54_RS02240 (KCG54_02255) metK 452799..453968 (-) 1170 WP_254324524.1 methionine adenosyltransferase -
  KCG54_RS02245 (KCG54_02260) - 454361..455242 (+) 882 WP_254324525.1 lysophospholipid acyltransferase family protein -
  KCG54_RS02255 (KCG54_02270) recC 455566..458865 (+) 3300 WP_254324526.1 exodeoxyribonuclease V subunit gamma Machinery gene
  KCG54_RS02260 (KCG54_02275) - 458869..459375 (+) 507 WP_107768910.1 thioredoxin family protein -
  KCG54_RS02265 (KCG54_02280) lapB 459490..460659 (-) 1170 WP_003684462.1 lipopolysaccharide assembly protein LapB -
  KCG54_RS02270 (KCG54_02285) - 460685..461008 (-) 324 WP_107768909.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  KCG54_RS02275 (KCG54_02290) ilvE 461222..462220 (+) 999 WP_254324527.1 branched-chain-amino-acid transaminase -
  KCG54_RS02280 - 462694..463539 (+) 846 WP_254324528.1 hypothetical protein -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 124897.64 Da        Isoelectric Point: 4.6909

>NTDB_id=558026 KCG54_RS02255 WP_254324526.1 455566..458865(+) (recC) [Neisseria subflava strain TT0077]
MFYLYQSDRLEALAEMCARIHQALPLDAVLAQEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEEFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEIIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEEKDDTLLHCLQNDIQNLIMPSERL
YQQEEGEAGGQQALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQKNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLKSRFEVDKVLPLLESRLVLQRFGLSEEDLPLLHE
AVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWN
EPANVESWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALSQPPAEAQPFFLEALS
QEEPGKTIHQGELISFWRNPVKVWLKKNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARRKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDAELIRSNKRPSEPYEESFDDLVLQGTIGNLYECGRIVFLNPKDNAPNRIARLLEHLIF
CAVAPKSVANRQTYIVSLGQTETYAAIGQEAARALLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYNKKEDWDATLRKAHE
VFNGNKMSKGQKEYTEVKLVFGHSEESPLEEPLFENLVVNLLVPLLNSAAGKNNATEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=558026 KCG54_RS02255 WP_254324526.1 455566..458865(+) (recC) [Neisseria subflava strain TT0077]
ATGTTTTATCTTTATCAGTCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCGTATTCATCAGGCCTTGCCTTTGGA
TGCGGTATTGGCGCAGGAAGAAGTGGTGGTGCAGAGCCAGGGGATGCGGCGGTATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCGGCCGGTTTGGCGTGGCAGCTGATGCGTAAATTGGTTCCCGATGTG
CCGCCGCTCAGCCCGTTTTCGCCTGAGGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAAGAGTTTCAGACGGC
CCCGGAATACGAAAACGTGCGCCTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AGATGGCAGATATTTTCGACCAATATTTGGTGTACCGTCCGGATTGGATTGATGCGTGGCAGGCTGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCTGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGCTGTTGGCGCAGTTGGATAAATCGGTTTTGCCGCAAAGGTTGTTCGTATTCGGCATTTCGACAATGG
CGCCGATGTATCTGCAACTGCTGCACCAAATTTCCAAGCATTGCGATGTATTTGTGTTCGCACTCAACCCGAGCAGCCAG
TATTGGGGCGAGATCATCGATGAGGCGCAGATTTTGAAAAGGGGCGATGAGGCGGATTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGACGCGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGAAAAAGACGATACCTTGTTGCATTGTCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TATCAACAGGAAGAAGGCGAAGCAGGCGGGCAACAGGCTTTGGTTCAGGTTCACGATGCGGACGGCAATCCAGTGTGTGT
CGAGCCGGATAAGCTGCTGAACGACGGCTCCGTCAAAATCGTCGCGGCGCACAGCCCTTTGCGCGAATTGCAGATTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAAAAATCCCGACTGGCAGCCGCACGATATTGCCGTGTTGACGCCGAACATTGAG
CCGTACAGTCCGTTTATCGAAGCCGTTTTCGGACAGGAGCAGGCAGGCAGCCAGGCTTTGCCGTATTCGATTTCGGATGT
GAAGCTCAGCCGCCGTCAGCCGTTGCTGTATGCTTTGGCACAAACTTTGGACTTGCTGAAGAGCCGGTTTGAAGTGGACA
AGGTTTTGCCTTTACTGGAAAGCCGGTTGGTGTTGCAACGCTTCGGTTTGAGCGAGGAAGATTTGCCGCTGCTGCATGAG
GCTGTTGCCGGATTAAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGCAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCTGAAGGCGGCAACGGCATGTGGCAGGGCGTGAGCGCGTGGCATA
GCAATGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCTGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGAAT
GAGCCTGCTAATGTGGAAAGTTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCA
ATACGCCAAGCAACAGTTTGAGCAATCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATTACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGTTGGGTTTGAATGACGGCGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTTGACCTGATTGCTAAACATCCGAAAAAAGGCGACCGCGCCCGCCGTGACGACGACCGTT
ATCTCTTCCTCGAAGCCTTAATCAGCGCGCGCGAAATGTTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTCGCGCCGTCTTCGTTAATCAGCGAGCTGCTGGATACTATTGCCGCCATGACAGGGAAAAGTGGGCGCGAGTTATC
GGAGAAATGGGTGAAACATCATCCGTTGCAGGCGTTTTCGCGCCGTTATTTCCAAAAGGATGCGCTTTCAGATGGTCTCT
TCAGTACGCGCCAAGATTACGCCGATGCGTTGAGCCAACCGCCAGCGGAAGCGCAGCCGTTTTTCCTTGAGGCTTTAAGT
CAGGAAGAGCCGGGCAAAACCATTCATCAAGGCGAGCTCATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAAGAA
AAATTTAAGCTGGGATCAGCCGTATCTGGACGGCGCATGGGAGTCTGCCGAACCGTTTGAGCCGCAACATGAAGGTCGGA
TTGCCGATGCTTATTTGGATGCGCGGCGCAAAGGGGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCCGAAAGTCTG
ATGCCGGTAGGCGAGTTGGGCGGTTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAATGTGGATGCCGAGTTGATACG
CAGCAACAAAAGGCCGTCTGAACCTTATGAAGAATCCTTTGACGACTTGGTTTTACAAGGTACCATCGGCAATCTTTATG
AATGCGGCCGCATTGTGTTTCTAAACCCAAAAGACAATGCGCCCAACCGTATTGCCCGTTTACTGGAGCATTTGATTTTT
TGCGCCGTCGCCCCTAAATCCGTTGCAAACCGACAAACCTATATTGTCAGCTTGGGGCAGACCGAAACCTATGCCGCCAT
CGGGCAAGAGGCGGCGAGGGCACTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TCGCCAAAACCAGTCTTGCCGCTGCGGAGGAGTACAACAAGAAAGAGGATTGGGATGCTACCTTGAGAAAAGCCCATGAG
GTTTTTAACGGCAATAAAATGAGCAAAGGGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGTCATTCGGAAGAATC
GCCTCTTGAAGAGCCGCTATTTGAAAACCTTGTCGTCAATCTGCTTGTTCCGCTTTTGAACAGCGCGGCAGGGAAAAACA
ATGCAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(807-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.872

99.727

0.647