Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   KCG52_RS09650 Genome accession   NZ_CP073114
Coordinates   2044652..2045797 (+) Length   381 a.a.
NCBI ID   WP_254344068.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2039652..2050797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS09620 (KCG52_09675) rsmA 2040245..2041024 (+) 780 WP_254344060.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  KCG52_RS09625 (KCG52_09680) - 2041040..2041705 (+) 666 WP_254344062.1 sel1 repeat family protein -
  KCG52_RS09630 (KCG52_09685) - 2041708..2042436 (+) 729 WP_003747231.1 amino acid ABC transporter ATP-binding protein -
  KCG52_RS09635 (KCG52_09690) - 2042500..2042859 (+) 360 WP_049322913.1 hypothetical protein -
  KCG52_RS09640 (KCG52_09695) - 2042864..2043316 (+) 453 WP_254344064.1 protein YgfX -
  KCG52_RS09645 (KCG52_09700) folC 2043355..2044638 (+) 1284 WP_254344066.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  KCG52_RS09650 (KCG52_09705) tpc 2044652..2045797 (+) 1146 WP_254344068.1 cell division protein FtsN Machinery gene
  KCG52_RS09655 (KCG52_09710) - 2045790..2046323 (+) 534 WP_254344070.1 CvpA family protein -
  KCG52_RS09660 (KCG52_09715) purF 2046476..2048020 (+) 1545 WP_254344071.1 amidophosphoribosyltransferase -
  KCG52_RS09665 (KCG52_09720) greB 2048095..2048586 (+) 492 WP_036490477.1 transcription elongation factor GreB -
  KCG52_RS09670 (KCG52_09725) - 2048675..2049382 (-) 708 WP_254344072.1 SIMPL domain-containing protein -
  KCG52_RS09675 (KCG52_09730) - 2049493..2049984 (-) 492 WP_070814496.1 DUF1841 family protein -
  KCG52_RS09680 (KCG52_09735) ftsB 2050085..2050360 (-) 276 WP_003679613.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41715.64 Da        Isoelectric Point: 9.9124

>NTDB_id=558013 KCG52_RS09650 WP_254344068.1 2044652..2045797(+) (tpc) [Neisseria subflava strain HP0048]
MSDNKQKETPNGYDLDGYEQLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQSQVKTADEPSKAVVLE
PNKEDVAAAEEAARHADAEAPNKPQNAGDEEDNAPVEVLKPSRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAARKAQAQQEADEKENALAAKKRALQARAEKAEREAAAERNKLAQLEKAEKAIAERKS
AKNNKNSVKDKAEPTKKAEAKVEKTKNEKAKPETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEKE
RAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=558013 KCG52_RS09650 WP_254344068.1 2044652..2045797(+) (tpc) [Neisseria subflava strain HP0048]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACAACTCAAACGCCGCAACCGCCG
TCGCTTGGTTTTGGCCTCCGGCTTGGTGGTGGCTTCGGGTATGCTGTTCGGTCTGGCACTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCGCCTGTCGGTCAGAGCCAAGTCAAAACGGCTGACGAGCCGAGCAAGGCTGTTGTTTTAGAG
CCGAATAAAGAGGATGTCGCTGCTGCCGAGGAGGCTGCCCGCCACGCGGATGCCGAAGCGCCAAATAAACCTCAAAATGC
CGGCGATGAAGAAGACAATGCGCCGGTCGAAGTGCTGAAGCCGAGCCGTGAATCCGCTCCCGAAGATGTCGGCGAGCCGT
TGGTTTTGATTAACGATACTTTGGATGACGGCAATATTAAAGGTTTGGAAGAGTCCGAGCGTATTCAACGCGCAGAGGCT
GCCAAACGCGAAGCTGCCGAACGCCGAGCCGAAGAACGCCGCCAACGTCAGGCAGAACAACGTGCTGCGGCACGCAAGGC
ACAAGCCCAACAGGAAGCGGATGAAAAAGAAAACGCATTGGCGGCTAAAAAACGCGCACTTCAAGCGCGTGCTGAAAAAG
CAGAGCGTGAAGCCGCTGCCGAGCGCAATAAATTAGCTCAATTGGAAAAGGCAGAGAAGGCCATTGCCGAGCGTAAATCT
GCCAAAAACAACAAAAACAGCGTAAAAGACAAGGCCGAACCTACTAAGAAAGCAGAAGCCAAAGTTGAAAAAACAAAAAA
TGAAAAAGCTAAACCAGAAACGGCCAAAGCTGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAGCTA
AGCCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAGCCTGCGAAAAAAGCCGCTATTCAGGCTGGTTATGCTGAAAAAGAA
CGCGCACAAAGCCTGCAACGTAAAATGAAAGCGGCAGGTATCGATTCGACCATTACTGAAGTGATGACCGATAAAGGTAA
GGTATATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCCGAGCGTGATTTGAACAAATTGCGTGTACATGGCA
TTGCCGGTCAGGTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(308-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

48.485

100

0.504