Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KCG52_RS09325 Genome accession   NZ_CP073114
Coordinates   1975338..1976714 (-) Length   458 a.a.
NCBI ID   WP_070765374.1    Uniprot ID   A0A9X7FAM0
Organism   Neisseria subflava strain HP0048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970338..1981714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS09300 (KCG52_09355) - 1972210..1972827 (-) 618 WP_254343963.1 4'-phosphopantetheinyl transferase superfamily protein -
  KCG52_RS09305 (KCG52_09360) - 1972880..1973392 (-) 513 WP_254343965.1 hypothetical protein -
  KCG52_RS09315 (KCG52_09370) - 1973765..1974325 (+) 561 WP_254343968.1 pseudouridine synthase -
  KCG52_RS09320 (KCG52_09375) - 1974381..1975187 (-) 807 WP_254343970.1 DUF4198 domain-containing protein -
  KCG52_RS09325 (KCG52_09380) radA 1975338..1976714 (-) 1377 WP_070765374.1 DNA repair protein RadA Machinery gene
  KCG52_RS09330 (KCG52_09385) - 1976795..1977031 (+) 237 WP_254343972.1 hypothetical protein -
  KCG52_RS09335 (KCG52_09390) - 1977021..1978145 (+) 1125 WP_254343974.1 DNA cytosine methyltransferase -
  KCG52_RS09340 (KCG52_09395) - 1978142..1979182 (+) 1041 WP_254343977.1 restriction endonuclease PLD domain-containing protein -
  KCG52_RS09345 (KCG52_09400) - 1979183..1981072 (+) 1890 WP_254343979.1 Z1 domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49318.72 Da        Isoelectric Point: 7.0601

>NTDB_id=558011 KCG52_RS09325 WP_070765374.1 1975338..1976714(-) (radA) [Neisseria subflava strain HP0048]
MAKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLSMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=558011 KCG52_RS09325 WP_070765374.1 1975338..1976714(-) (radA) [Neisseria subflava strain HP0048]
ATGGCAAAAGCCCCAAAAACCATCTACCAATGTTCCGAATGCGGCGGTACTTCCCCAAAATGGCAGGGTAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCACCCGAGCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCAG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTGACCGCCACCGAAGTACCGCGCAACCCGACCGGCATGGGCGAGCTTGAC
CGCGTATTGGGCGGCGGCTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGTATCGGCAAATCCACATTACT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCTGGTGAAGAATCCGCACAACAAGTTGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAACACCAGCCCGAAGTCGTCGTCATCGACTCCATCCAAACTATGTATTCCGACCAAATCACTTCCGCCCCTGG
CTCAGTATCACAGGTACGCGAATGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATATTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGTGTGCTGGAGCATATGGTCGATACCGTTCTGTATTTCGAAGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGAGCGGCAAATGAATTGGGCGTATTCGCCAT
GACTGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCTGCCATCTTCCTTGCCAGTTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTTTAGTCGAAATTCAGGCATTGGTCGATGATGCACACGGCTTCACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCTCCATGTTGCTCGCCGTCCTCAACCGCCACGGCGGTATCGC
CTGCTTCGACCAAGATGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCTGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGTCCCATGCCTGAAAAAACCGTTGTATTCGGCGAAATCGGCTTAAGCGGTGAA
GTCCGCCCTGTTGCACGCGGACAAGAGCGGCTCAAAGAGGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCAAATCTAAAAATCTACGGCGTCAGCAGTTTACAGGAAGCGATTGATGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.892

100

0.502
  radA Streptococcus mitis NCTC 12261

47.368

99.563

0.472
  radA Streptococcus pneumoniae Rx1

47.566

98.69

0.469
  radA Streptococcus pneumoniae D39

47.566

98.69

0.469
  radA Streptococcus pneumoniae R6

47.566

98.69

0.469
  radA Streptococcus pneumoniae TIGR4

47.566

98.69

0.469
  radA Streptococcus mitis SK321

47.45

98.472

0.467