Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KCG52_RS05880 Genome accession   NZ_CP073114
Coordinates   1240243..1241775 (-) Length   510 a.a.
NCBI ID   WP_254343310.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235243..1246775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS05860 (KCG52_05840) - 1235957..1236877 (+) 921 WP_049333053.1 patatin-like phospholipase family protein -
  KCG52_RS05865 (KCG52_05845) - 1236986..1238842 (+) 1857 WP_254343299.1 RNB domain-containing ribonuclease -
  KCG52_RS05870 (KCG52_05850) - 1238978..1239205 (+) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  KCG52_RS05875 (KCG52_05855) - 1239189..1240085 (+) 897 WP_254343301.1 polyprenyl synthetase family protein -
  KCG52_RS05880 (KCG52_05860) pilA 1240243..1241775 (-) 1533 WP_254343310.1 signal recognition particle-docking protein FtsY Machinery gene
  KCG52_RS05885 (KCG52_05865) msrAB 1241921..1243489 (+) 1569 WP_254343312.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  KCG52_RS05890 (KCG52_05870) purB 1243620..1244990 (-) 1371 WP_070837262.1 adenylosuccinate lyase -
  KCG52_RS05895 (KCG52_05875) - 1245201..1245641 (+) 441 WP_049323011.1 surface-adhesin E family protein -
  KCG52_RS05900 (KCG52_05880) - 1245975..1246544 (-) 570 WP_254345507.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54557.48 Da        Isoelectric Point: 4.2012

>NTDB_id=557998 KCG52_RS05880 WP_254343310.1 1240243..1241775(-) (pilA) [Neisseria subflava strain HP0048]
MFSFFRRKKKQETPTPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHIESVVESAVETVSETVEQVREALTETP
SETVEKVEEHVEAAKEAAVETVSEAVEQVQEAVAEMPSEAAEAAEEVVEQAEAAKEAAVETVSETVEQVQETVAEMPSEA
AEAAEEAAGQAEAVKEEAVEAVSEAVEQVQEAVAETSVEAPAPVEEPKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=557998 KCG52_RS05880 WP_254343310.1 1240243..1241775(-) (pilA) [Neisseria subflava strain HP0048]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGACTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAGTCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATA
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGTCAGTGAAACCGTCGAGCAGGTTCGGGAAGCTTTGACCGAAACGCCG
TCTGAAACAGTTGAAAAAGTGGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCTGTTGAAACCGTCAGCGAGGCTGTTGA
ACAGGTTCAAGAAGCCGTTGCCGAGATGCCGTCTGAAGCGGCTGAGGCTGCTGAGGAAGTAGTAGAACAGGCTGAGGCGG
CAAAAGAAGCGGCAGTTGAAACCGTCAGCGAGACTGTTGAACAGGTTCAAGAAACCGTTGCTGAGATGCCGTCTGAAGCG
GCTGAGGCTGCTGAAGAAGCAGCAGGACAGGCCGAAGCAGTAAAAGAAGAAGCTGTTGAAGCAGTTAGCGAAGCTGTCGA
GCAAGTTCAAGAAGCCGTTGCGGAAACATCGGTTGAAGCCCCTGCTCCGGTGGAAGAACCCAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGCGACAAAATGGCAAAATCGTTGGCAGGCGTGTTCGGAGGCGGACAAATCGAC
GAGGATTTGTATGAAGAGCTGGAAACCGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAATGAATTGCGCGGCGCGCTGAAAGATGCGCTGTACGACT
TGATTAAGCCTTTGGAGAAACCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGC
GCAGGCAAAACCACATCTATCGGCAAACTCGCCAAATACTTCCAAGCGCAGGGCAAATCTGTGCTGTTGGCGGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAAGCTTGGGGCGAACGCAACAATGTGACCGTCATCTCGCAAACCACAG
GCGATTCCGCAGCCGTTTGCTTCGATGCTGTCCAAGCCGCCAAAGCGCGCGGCATCGATATCGTGCTGGCCGATACTGCC
GGCCGTCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATTGTTGTACTTGATGCCAACATCGGCCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCGC
TGGGCCTGACCGGCCTGATCGTCACCAAGCTCGACGGTACGGCCAAAGGCGGTATCCTTGCCGCCCTTGCCTCTGACCGC
CCAGTTCCCGTCCGCTACATCGGCGTAGGCGAAGGCATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTTGTAGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

84.146

80.392

0.676