Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   KCG52_RS03630 Genome accession   NZ_CP073114
Coordinates   763603..766902 (-) Length   1099 a.a.
NCBI ID   WP_254345082.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758603..771902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS03605 (KCG52_03585) ilvE 759644..760642 (-) 999 WP_254345077.1 branched-chain-amino-acid transaminase -
  KCG52_RS03610 (KCG52_03590) - 760856..761179 (+) 324 WP_254345078.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  KCG52_RS03615 (KCG52_03595) lapB 761205..762374 (+) 1170 WP_254345080.1 lipopolysaccharide assembly protein LapB -
  KCG52_RS03620 (KCG52_03600) - 762561..763016 (+) 456 WP_004521061.1 GNAT family N-acetyltransferase -
  KCG52_RS03625 (KCG52_03605) - 763093..763599 (-) 507 WP_188211522.1 thioredoxin family protein -
  KCG52_RS03630 (KCG52_03610) recC 763603..766902 (-) 3300 WP_254345082.1 exodeoxyribonuclease V subunit gamma Machinery gene
  KCG52_RS03640 (KCG52_03620) - 767233..768114 (-) 882 WP_254345084.1 lysophospholipid acyltransferase family protein -
  KCG52_RS03645 (KCG52_03625) metK 768507..769676 (+) 1170 WP_049351011.1 methionine adenosyltransferase -
  KCG52_RS03650 (KCG52_03630) - 769846..770910 (+) 1065 WP_254345086.1 DUF1176 domain-containing protein -
  KCG52_RS03655 (KCG52_03635) - 771035..771343 (+) 309 WP_254345088.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 125006.60 Da        Isoelectric Point: 4.6324

>NTDB_id=557987 KCG52_RS03630 WP_254345082.1 763603..766902(-) (recC) [Neisseria subflava strain HP0048]
MFYLYQSDRLEALAEMCAHIHQALPLDAVLAQEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLAEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEESEAGAQQAWVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQNNSDWQPHDIAVLTPNIE
PYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
AVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
EPADVEGWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELAEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPPVEAQPFFLEALS
QEEPGKTIQQGEFISFWRNPVKVWLKRNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDTRRKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDAELIRSNKRPSEPYELHFDDLVLQGTIGNLYECGRIVFQNQKDNAPNRIARLLEHLIF
CAVAPQTVANRQTYIVSLGQTETYAAIGQEAARELLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYGKKEDWDAALRKAYE
VFNGNKMNKAQKEYTEVKLVFGHSNEAPLEEPLFENLVVNLLVPLLNSAAGKNNATEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=557987 KCG52_RS03630 WP_254345082.1 763603..766902(-) (recC) [Neisseria subflava strain HP0048]
ATGTTTTATCTTTATCAGTCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGGCCTTGCCTTTGGA
TGCGGTATTGGCGCAGGAAGAAGTGGTGGTGCAGAGCCAGGGGATGCGGCGTTATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCTGCCGGTCTGGCGTGGCAGCTGATGCGTAAATTGGTTCCCGATGTG
CCGCCGCTCAGCCCGTTTTCGCCTGAGGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAAGCGTTTCAGACGGC
CCCGGAATACGAAAACGTACGCCTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AAATGGCGGATATTTTCGACCAATATTTGGTGTACCGGCCGGATTGGATTGATGCGTGGCAGGCAGGGAAGCTGCTGGGC
TTGGGCGATGATGAGGATTGGCAGGCGCGGTTGTGGCGTTATTTGGACGATGGCAGCCAATCGGCGCCGCACCGCGTGGC
CTTGTGGGAAAAATTGTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTGTTTGTATTCGGTATTTCGACAATGG
CGCCGATGTATCTGCAACTGCTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCACTCAATCCGAGCAGCCAG
TATTGGGGCGAGGTCATCGACGAGGCGCAGATTTTGAAAAGGGGTGATGAGGCGGATTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGTAAGCAGGGGCGCGATTTCTTTGATTTTCTGGCAGAAGTGGAAACTGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTGTTGCATTGCCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TATCAACAGGAAGAAAGCGAGGCAGGCGCGCAGCAGGCTTGGGTTCAAGTCCACGATGCGGACGGCAATCCGGTGTGTGT
CGAGCCGGACAAGCTGCTGAACGACGGCTCGGTCAAAATCGTTGCGGCTCACAGTCCTTTGCGCGAACTGCAGATTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAATAATTCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAG
CCGTACAGCCCGTTTATCGAAGCCGTTTTTGGACAGGAGCAGGCGGGCAGCCAGGCGTTGCCGTATTCGATTTCGGATGT
AAAACTCAGCCGCCGTCAGCCCTTGTTGTATGCTTTGGCGCAAACATTGGACTTGCTGGAAAGCCGGTTTGAAGTGGACA
AGGTTTTACCTTTGCTGGAAAGCCGGTTGGTGCTGCAACGCTTCGGGTTGAGCGAGGAAGATGTGCCGCTGCTGCATGAG
GCTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGTAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCCGAAGGCGGCAACGGTATGTGGCAGGGCGTGAGCGCGTGGCATA
GCAACGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGCAA
GAGCCTGCCGATGTGGAAGGCTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCA
ATACGCCAAGCAGCAGTTTGAGCAGTCTTTAGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTGAGCGGTGGCATTACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGCTGGGTTTGAATGACGGCGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTCGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGTT
ATCTCTTCCTCGAAGCCTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTTGCACCGTCTTCGTTAATCAGCGAGCTTCTGGATACCATTGCCGCCATGACGGGGAAAAGCGGGCGCGAGTTGGC
GGAGAAATGGGTGAAACATCATCCTTTGCAGGCGTTTTCGCGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTACGCCGATGCGTTAAACCAACCGCCAGTAGAAGCGCAGCCGTTTTTCCTTGAGGCTTTAAGT
CAGGAAGAGCCGGGCAAAACCATTCAGCAGGGCGAGTTTATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAAGAG
AAATTTAAGCTGGGATCAGCCGTATTTGGACGGCGCATGGGAATCTGCCGAACCGTTTGAGCCGCAACATGAAGGCCGGA
TTGCCGATGCCTATTTGGATACGCGGCGCAAAGGTGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCAGAAAGCCTG
ATGCCGGTGGGCGAATTAGGCGGCTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTAGATGCCGAGTTGATACG
CAGCAACAAAAGGCCGTCTGAACCTTATGAATTACACTTTGACGACTTGGTTTTACAAGGCACCATCGGCAATCTTTACG
AATGCGGACGCATTGTGTTCCAAAACCAAAAAGACAATGCGCCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCGTCGCCCCTCAAACCGTTGCCAACCGACAAACCTATATTGTCAGCCTGGGACAGACCGAAACCTATGCCGCCAT
CGGGCAAGAGGCGGCGAGAGAGCTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGCCTTGCCGCTGCGGAGGAGTACGGCAAGAAAGAGGATTGGGATGCTGCCTTGAGAAAAGCCTATGAG
GTTTTTAACGGCAATAAAATGAACAAAGCGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTCGGTCATTCGAACGAAGC
GCCGCTTGAAGAGCCGCTATTTGAAAACCTCGTCGTCAATCTGCTTGTTCCGCTTTTGAACAGCGCGGCAGGGAAAAACA
ATGCAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(807-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.69

99.727

0.645