Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KCG52_RS02860 Genome accession   NZ_CP073114
Coordinates   601521..601982 (+) Length   153 a.a.
NCBI ID   WP_254344927.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 596521..606982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS02835 (KCG52_02820) - 596623..597291 (-) 669 WP_036491758.1 DUF3108 domain-containing protein -
  KCG52_RS02840 (KCG52_02825) purN 597322..597948 (-) 627 WP_254345462.1 phosphoribosylglycinamide formyltransferase -
  KCG52_RS02845 (KCG52_02830) - 598046..598864 (-) 819 WP_003745836.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG52_RS02850 (KCG52_02835) - 599025..600290 (-) 1266 WP_254344923.1 Glu/Leu/Phe/Val dehydrogenase -
  KCG52_RS02855 (KCG52_02840) - 600712..601425 (+) 714 WP_254344925.1 phosphoglycolate phosphatase -
  KCG52_RS02860 (KCG52_02845) recX 601521..601982 (+) 462 WP_254344927.1 recombination regulator RecX Regulator
  KCG52_RS02865 (KCG52_02850) - 602058..602219 (+) 162 WP_003745829.1 hypothetical protein -
  KCG52_RS02870 (KCG52_02855) - 602337..604493 (-) 2157 WP_254344928.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KCG52_RS02875 (KCG52_02860) rpoZ 604600..604806 (-) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  KCG52_RS02880 (KCG52_02865) gmk 604859..605476 (-) 618 WP_003745825.1 guanylate kinase -
  KCG52_RS02885 (KCG52_02870) - 605645..606205 (+) 561 WP_003745823.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17913.17 Da        Isoelectric Point: 8.0021

>NTDB_id=557985 KCG52_RS02860 WP_254344927.1 601521..601982(+) (recX) [Neisseria subflava strain HP0048]
MRPPKTLRARALDILSRQEVSRVGLKRKLAPHAESKEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCRELLPDREDELQTAISVLRKKFKQEAEDLKEKQKQARFLAYRGFGADTIQTALKTAWNEEEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=557985 KCG52_RS02860 WP_254344927.1 601521..601982(+) (recX) [Neisseria subflava strain HP0048]
ATGAGACCCCCCAAAACCTTACGTGCCCGCGCCTTGGATATTCTTTCCCGTCAAGAAGTCAGTCGCGTCGGTTTGAAACG
CAAACTGGCTCCGCACGCTGAAAGCAAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCTGAAGCCTATATTCACAGCAAGAGTAACCGTTACGGCACGCTCCGCCTCAAACAAGCCTTGGCGCAA
CAAGGTATTGATGCGGATGACTGTCGAGAATTACTGCCCGACAGAGAGGACGAGCTGCAAACCGCCATTTCTGTTTTGCG
TAAAAAATTCAAGCAAGAAGCTGAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCGTATCGTGGCTTTGGTG
CAGACACTATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGAAGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

78.231

96.078

0.752