Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   KCG52_RS02810 Genome accession   NZ_CP073114
Coordinates   588526..590565 (-) Length   679 a.a.
NCBI ID   WP_254344921.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583526..595565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS02800 (KCG52_02785) - 585920..586714 (-) 795 WP_254344919.1 thymidylate synthase -
  KCG52_RS02805 (KCG52_02790) gdhA 587127..588461 (+) 1335 WP_003745850.1 NADP-specific glutamate dehydrogenase -
  KCG52_RS02810 (KCG52_02795) recG 588526..590565 (-) 2040 WP_254344921.1 ATP-dependent DNA helicase RecG Machinery gene
  KCG52_RS02815 (KCG52_02800) - 590816..593860 (-) 3045 WP_254345460.1 TonB-dependent receptor -
  KCG52_RS02820 (KCG52_02805) secB 594123..594557 (-) 435 WP_003745844.1 protein-export chaperone SecB -
  KCG52_RS02825 (KCG52_02810) grxC 594579..594836 (-) 258 WP_222570596.1 glutaredoxin 3 -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75002.88 Da        Isoelectric Point: 7.4094

>NTDB_id=557984 KCG52_RS02810 WP_254344921.1 588526..590565(-) (recG) [Neisseria subflava strain HP0048]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDASIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAA
ALGGDSTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGSVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLVQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSKLAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=557984 KCG52_RS02810 WP_254344921.1 588526..590565(-) (recG) [Neisseria subflava strain HP0048]
ATGACACCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCCAAGAAACTCGAAAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCATCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGTCGATCGGCG
TGCCGTGTCAGGTCGAGGGCGAGGTCATCCATCAGGAAGTCACGTTCAAACCGCGCAAGCAGTTGATTGTCCAAATCGCC
GACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAACG
CATCCGAGCCGTGGGCGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCACCCCAAAATCCGCGATGCCGAGAGCA
GCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGCTTGAACCAGCCCACTTTGCGCCGTATTATTCAG
ACGGCCTTAGACGTTACGCCGCTACACGACACCTTGCCGGATGCTTTATTAGGCCGTCTGAAACTGCCGCACCTTGCCGA
AAGCCTGCGTCTTTTGCATTCGCCGCCGCCGAGTTTCACCATCCACCAACTTTCCGACGGCGCGCTGCCCGCATGGCAGC
GGCTCAAATTTGACGAACTTTTGGCGCAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGTGTCAGCGGTACGGCGGCG
GCATTGGGTGGCGACAGCACGCTGACCCAAGCCCTGCGCCACGCCTTGCCGTTTGCCCTGACCGATGCCCAAGAAAGAGT
CGTGTCCGAAATCCGCCGCGACATGGCGCAAACCCATCCTATGCACCGCCTGCTGCAAGGTGATGTCGGCAGCGGCAAAA
CCATTGTTGCTGCTTTGTCTGCTTTGACCGCCATTGAGTCCGGCGCGCAGGTGGCTGTAATGGCACCGACCGAAATCCTT
GCCGAACAGCATTTCATCAAGTTCAAACAATGGCTTGAACCGTTAGGACTCGAAGTTGTCTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCTAAAGATGAAGCCAAAGCCAAACTGGCTGACGGCTCTGTCAAAATCGCCGTCGGTACGCACGCCCTGTTTT
CAGACGACGTCGAGTTCCAAAATCTCGGCTTGGTGATTGTAGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTCGCCATGAGTTTCTT
TGCCGACTTGGATGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTTGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTCCAACTGCAAACCGCCACCGAAACCCTAGTCCAGCTTCAGGCAGCCTTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCTCAGTTTGCCGCAGGCCGTCTGAACGTCTTGG
TCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGGCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGAACC
CTTGAGCAAACTCGCCAAAGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ACATTCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTCCCCATGCTGCGCTTCGCCAACCTTGAAGAAGAC
CTGCACCTCTTGGAACAAGCGCGCGAAATTGCCCCATTGTTGATCGAACAAAACCCCGAAATCGTCGAAGCGCATCTGGC
AAGGTGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

DEAD/DEAH box helicase (DEAD)

(261-418)

RecG wedge domain (RecG_wedge)

(14-163)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.373

100

0.934