Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   KCG52_RS01810 Genome accession   NZ_CP073114
Coordinates   376094..379750 (+) Length   1218 a.a.
NCBI ID   WP_254344727.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 371094..384750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS01805 (KCG52_01785) - 372190..375948 (+) 3759 WP_254344725.1 hemagglutinin repeat-containing protein -
  KCG52_RS01810 (KCG52_01790) recB 376094..379750 (+) 3657 WP_254344727.1 exodeoxyribonuclease V subunit beta Machinery gene
  KCG52_RS01815 (KCG52_01795) - 379809..380540 (-) 732 WP_254344730.1 phosphoadenylyl-sulfate reductase -
  KCG52_RS01820 (KCG52_01800) dinB 380656..381714 (-) 1059 WP_254344731.1 DNA polymerase IV -
  KCG52_RS01825 (KCG52_01805) - 381792..382835 (-) 1044 WP_254345449.1 sulfate ABC transporter substrate-binding protein -
  KCG52_RS01830 (KCG52_01810) - 383088..383921 (+) 834 WP_254344734.1 DUF4198 domain-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138384.59 Da        Isoelectric Point: 5.6399

>NTDB_id=557981 KCG52_RS01810 WP_254344727.1 376094..379750(+) (recB) [Neisseria subflava strain HP0048]
MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGDLQEAQAK
LQETWQKICVHLEDLEKAFWAIFPKLNGQTYKRKTFENVFTDLKTNAESNRLPRLSKQTLEKLSLFSIDTLNSKLKKEYK
ADADAPEIIQLQALANLGRDLQAMKSAEEAVFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTTNEHGNALA
KAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLENIDYSEVSASRAESRLSPHRPAIQVRWLNTDDQTGKEILRSRAAEYCADEIAFALNEAAEG
RLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKDGIFAAVQQFAARHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALHKWLNEQISRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTDNHETE
LLAKSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPEAGRESVSQSYQSTTDVL
EMLKTNWQRFIKNAPENTEFTFTEEAPPETIYQYSRQQDQALSAQSIKHRSFDFIRHTSFTGLSRHTKSTDEQHEPLQPA
IDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSTML
DTCRLTPLISESLSQIPPTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGHVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLPKIAIRYLFLRGMDGSDQGIWK
WDIDTAMLSTFVERKTNS

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=557981 KCG52_RS01810 WP_254344727.1 376094..379750(+) (recB) [Neisseria subflava strain HP0048]
ATGTCTTCCGCCCTTCCTTTTGACGCGCTCACCCTTTCCATCGACGGCACCAACCTTATCGAAGCTTCTGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTCTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAAGCGGCGACAGCAGAACTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTGTTGCAGGTTTTGAACGAA
ATCCAAACCTTGGGCGGCAAACCGGAACATATTTCAGACGGCCTGAACAAATATTACGAAAAAGAGAAAAAATCCCCCGA
TGACTTTCTCAATCGCTTGATTCCTTTGGCTTTAGGCGAGCAAGACGGACAGGAAAGCTGCCATCGCCTGATTCTTCGCC
TCAAAGCCGCGCTGAGCCAGTTTGACAACGCCTCGATTTACACCATCCACGGCTTCTGTCAGCGCGTCTTGCGCGATTAC
GCGTTTTTGTGCGGCGCGCCTTTGGATGTCGAGCTGTCGGACGACTCGCGCGAGAGGCTGCTGATTCCTGCGCAAGACTT
TTGGCGGCAGAAAGTGGCAACCGATGCCACATTGGCACAATTGGTTTTTGACCGGAAATGCACGCCCGAAGAAATGCTTG
CCGAAATCAAAAGCTATACCGGCCGCCCCTATCTGAAATTCAGACGGCCTGAAGGCGATTTGCAAGAAGCTCAAGCCAAG
CTTCAAGAAACATGGCAAAAAATTTGCGTCCACTTGGAAGACTTGGAAAAAGCGTTTTGGGCAATTTTTCCCAAACTTAA
CGGCCAAACCTACAAAAGAAAAACCTTTGAAAATGTTTTTACCGATTTAAAAACAAACGCCGAATCCAACCGCCTGCCCC
GCCTGAGCAAACAAACGCTGGAAAAATTAAGCCTCTTCAGTATCGACACGCTCAACAGCAAACTGAAAAAAGAATATAAA
GCCGATGCCGATGCGCCGGAAATTATTCAGCTGCAAGCCTTGGCTAATCTCGGTCGTGATTTGCAGGCAATGAAAAGCGC
GGAAGAAGCGGTCTTCATCTGCCTGCAACTCGACCTCCTTTCCTACATCAACCAATCCATTGCCGAACAAAAAAAATCAC
GCCGCGAGCGTGTGTTTGATGATTTGCTGCTGGATGTCCATCAGGCATTGACCACCAATGAACACGGCAACGCATTGGCA
AAAGCGGCGGCGGCAAACTGGGAAATCGCGCTGATTGACGAATTTCAAGATACCGACCCGTTGCAATACGAAATTTTCCG
CCAAATTTTTATCGAGCAAGGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGG
ACATTTACGCCTATCTGCAAGCCGCTCAAGATGCGGACAGGCACTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATCAACGGCATCAGCGCCTTGTTCAAACAAAAAAAACACCCCTTTGTGTTGGAAAACATCGATTACAGCGAGGTCTC
CGCCAGCCGTGCCGAAAGCCGGCTGTCGCCACACCGCCCCGCCATCCAAGTGCGCTGGCTCAATACGGACGACCAAACCG
GCAAAGAGATTTTGCGCAGCCGAGCCGCCGAATATTGTGCCGATGAAATTGCCTTTGCGCTCAATGAAGCAGCCGAAGGC
CGTCTGAATTTCAAAGGCCGCGCATTGGAATCCGGCGATATTGCCGTTTTGGTCCGTACCAACAACGAAGCGGCGATGAT
TGCCGGAAAACTGAAACAGCGCCGTATCCAAAGCGTGTTGCTGTCGCGCCAGTCCGTTTTCGATTCCGCCGAGGCCGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAAACCGACTGGCTGCGCTTTGTCTTGACCGGCGTTTTGTTC
GGCTATACCGCCAAAGAGATATACGAACTCAACCACAACGAACATCAGCTGCTCAAATGGCTGGAGTCGTCGGCCGAAGC
CATGGAAAAATGGCGGAAAGACGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGCCCGACATGACATCGAGACGCGCCTGC
TCAAAGGCGGCAACGAACGCAGCCTGACCAACTACTACCAGATTTTGGAGCTTTTGGCCGAAGAAGACAGCCAAAGCCGC
AACCCAGCCGCCCTGCATAAATGGTTAAACGAGCAAATCAGCCGCGCGCGCAGCGGCCATTTCCCGTCAGACGCGCAAAC
CATCCGTCTTGAAAGCGACGAAAAACTGGTCAAAATCGTTACCATGCACGCGTCGAAAGGTTTGCAATATCCTTTGGTTT
ACTGCCCCTTCGCATGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTGCATACGGACAACCACGAAACCGAG
CTGCTGGCCAAATCGCAAACCTCGGAAGCAGAACTAAGCCATCTTGCCGACGAAAAGACGGCAGAAGATTTGCGCCTGCT
CTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAACATCTACGCCGCCGCCAACAAAAACTGTACGCCGAACAATCCTT
TTGCCTATCTACTCGAAGGTTTGCCAGAGGCCGGCCGTGAAAGCGTCAGCCAAAGCTATCAAAGCACAACAGACGTTCTA
GAAATGCTCAAAACCAACTGGCAACGCTTTATTAAAAATGCGCCCGAAAATACGGAATTCACCTTCACGGAAGAAGCCCC
ACCGGAAACCATCTATCAATACAGCCGCCAACAAGACCAAGCCTTGAGCGCACAGAGCATTAAACACCGCAGTTTTGACT
TTATCCGCCACACCAGCTTTACCGGTTTGAGCCGGCACACCAAGTCAACCGACGAGCAACACGAGCCTTTGCAACCTGCC
ATCGATCCGGCAGAAAGCGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCCCACTTTCAGACGGCCTCGATATCCA
CCATTTTCCCCGCGGCACCAATGCCGGCGTATGTTTGCATGAAATGCTGGAAAAACTCGACTTCGCCGCCTCTGCCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTGCAACGCCACAGCTTTGAAGACAAATGGCTGCCGACGGTAAGCACCATGCTC
GACACCTGCCGCCTGACGCCTTTAATCAGCGAGAGCCTGTCGCAGATTCCGCCGACCCGACGCCTGCCCGAAATGGGGTT
CACCCTGTACATGGACGATTTCAAACTGGACGACTTACGCCGTTGGTTTGCCTCAAGCGAAGCAAATCTGCCGCCCGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTACAAGGCTATTTAAACGGCTTTATCGATATGGTTTGCCAAGAT
TCAGACGGCCATGTCGTTTTAATCGACTACAAATCCAACCATTTGGGCAACGATGCAAGCGCCTACACGCAACAGGCGAT
GAACGAAGCCGTGGCGCATCATCACTACTACCTGCAAGCTCTGATCTACGCCGTTGCCATCGCGCGCTACTATGCCCTGC
GCGGCAAGCCCTTGCCCAAAATCGCCATCCGCTACCTCTTCCTGCGCGGCATGGACGGCTCGGATCAAGGCATTTGGAAA
TGGGACATCGATACTGCCATGCTTTCCACTTTTGTTGAGCGAAAAACAAACTCCTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(469-842)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(995-1190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.729

99.097

0.602