Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   KCG52_RS01005 Genome accession   NZ_CP073114
Coordinates   217898..219661 (-) Length   587 a.a.
NCBI ID   WP_254344520.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 212898..224661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS00985 (KCG52_00965) tilS 213526..214854 (-) 1329 WP_254344516.1 tRNA lysidine(34) synthetase TilS -
  KCG52_RS00990 (KCG52_00970) - 214943..215902 (-) 960 WP_049322761.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  KCG52_RS00995 (KCG52_00975) - 216106..216507 (+) 402 WP_003679090.1 RNA-binding S4 domain-containing protein -
  KCG52_RS01000 (KCG52_00980) - 216602..217801 (-) 1200 WP_254344518.1 hypothetical protein -
  KCG52_RS01005 (KCG52_00985) recD 217898..219661 (-) 1764 WP_254344520.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG52_RS01010 (KCG52_00990) lolD 219794..220477 (-) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG52_RS01015 (KCG52_00995) - 220470..221720 (-) 1251 WP_254344522.1 lipoprotein-releasing ABC transporter permease subunit -
  KCG52_RS01020 (KCG52_01000) - 221935..222222 (+) 288 WP_254344529.1 hypothetical protein -
  KCG52_RS01025 (KCG52_01005) recR 222285..222890 (-) 606 WP_049348472.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64885.05 Da        Isoelectric Point: 5.6500

>NTDB_id=557974 KCG52_RS01005 WP_254344520.1 217898..219661(-) (recD) [Neisseria subflava strain HP0048]
MNPTDSILSSAADATIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKSDVDAVSNLPNLVGNADKPLILQGRKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDPKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEHPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTVLDKETAEKLEVYLPNHGFEIKERPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFTMTVHKSQGSEYREVWLLPPSVPATTEGEEETRGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALERQFEQPDMQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=557974 KCG52_RS01005 WP_254344520.1 217898..219661(-) (recD) [Neisseria subflava strain HP0048]
ATGAACCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGACCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGCGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTATTTGGATAAATCGG
ATGTCGATGCCGTAAGCAACTTGCCGAATTTGGTCGGCAATGCGGATAAACCGCTTATCCTGCAAGGCCGGAAATTGTTT
TTAGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTCGAAATCAAACGGCTGGCAAGTGCCGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATCCTAAAGACAGCAAAGAGCAACGGGATGCTGCGGCTTTGG
CCTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGCACGGGTAAGACCACGACCGTCGCAAAGCTTTTGGGCCTG
ATTTGCAATAACAGTACGAAGCTGCCCCGTATTGCGTTGGCTGCGCCGACGGGTAAAGCGGCTGCACATATGGCACGGGC
TTTGCAGCGTGCTTTAGACGGTTTTGATTTGTCTCCGAGCATTAAAGCGCATTTGGAAAACTTGGAAGGGCAGACTGTCC
ATCGATTGTTGAAACTGCGTCCGCCGCAAATGCGCCCTGCGTTCAATCATGAACATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCAATGTTGGATTTGCCGCTGGTGTTGGATTTATTACGTGCCGTGCCGACCGGTTGTCGTCTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGCTTGGGTGCCGTATTGGCGGCGTTGTCGCGTCCGACGGTTTTGGATA
AAGAAACTGCTGAAAAGCTGGAAGTGTACCTGCCCAATCATGGCTTTGAGATTAAAGAGCGGCCTCAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGCGCAGACAGCGGTATTGGTTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTTGAACAGTTTGATAAGTTCCCCAAAGAATTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TCGCCTTGCTGTATCAAAAGCAGCAGGATTATTGGCAGGCTGTGGCAGAGAATAATGTCGCACTCGCCTACGGTCATGCG
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATATTTGCAACGACA
AGGCAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAGATCATCATGATTACCCACAATGATTACATGCTGGAAGTGT
TTAACGGTGACATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGTTTGTCTGCCTATTTTCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTACCATGACGGTGCACAAGAGCCAGGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCGCCGTCAGTGCCTGCAACGACGGAGGGCGAGGAGGAAACCCGAGGATTGGATAAGG
CTTTGCTTTACACAGCCATTACCCGCGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCAGAGGAATTGTGTCAGGCTGTG
GGATGCCACCAAAAACGCAGGACGGCATTAGCCGACGCCTTGGAACGGCAGTTTGAACAACCTGATATGCAGGCTTCTGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_19)

(127-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.925

98.296

0.579