Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KCX70_RS03655 Genome accession   NZ_CP073105
Coordinates   752908..754269 (-) Length   453 a.a.
NCBI ID   WP_021209800.1    Uniprot ID   A0A2N8SQX7
Organism   Stutzerimonas stutzeri strain F2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 747908..759269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX70_RS03630 (KCX70_03630) glyA 748484..749737 (+) 1254 WP_021209805.1 serine hydroxymethyltransferase -
  KCX70_RS03635 (KCX70_03635) - 749883..751235 (+) 1353 WP_021209804.1 cache domain-containing protein -
  KCX70_RS03640 (KCX70_03640) - 751267..751905 (+) 639 WP_102852853.1 response regulator transcription factor -
  KCX70_RS03645 (KCX70_03645) - 752012..752473 (+) 462 WP_021209802.1 methyltransferase -
  KCX70_RS03650 (KCX70_03650) - 752530..752898 (+) 369 WP_212619303.1 PilZ domain-containing protein -
  KCX70_RS03655 (KCX70_03655) radA 752908..754269 (-) 1362 WP_021209800.1 DNA repair protein RadA Machinery gene
  KCX70_RS03660 (KCX70_03660) - 754385..754819 (+) 435 WP_212619304.1 CopD family protein -
  KCX70_RS03665 (KCX70_03665) - 754936..755205 (-) 270 WP_102852857.1 DUF465 domain-containing protein -
  KCX70_RS03670 (KCX70_03670) mscL 755417..755827 (+) 411 WP_102847070.1 large-conductance mechanosensitive channel protein MscL -
  KCX70_RS03675 (KCX70_03675) - 756238..758685 (+) 2448 WP_212619305.1 ATP-binding protein -
  KCX70_RS03680 (KCX70_03680) - 758859..759194 (+) 336 WP_021209794.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48469.94 Da        Isoelectric Point: 6.7490

>NTDB_id=557941 KCX70_RS03655 WP_021209800.1 752908..754269(-) (radA) [Stutzerimonas stutzeri strain F2]
MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETVIDGAAPPSGRAGWAGDQANIKTLAEVSVEEVPRFSTASGELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNVARQFPALYVTGEESQQQVAMRARRLDLPQDRLKVMTETCIESIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSVVMATWEGTRPMLVEVQALVDTSHMANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFINVVGGVKVLETASDLALMAAVISSLRNRPLDTDLLVFGEVGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=557941 KCX70_RS03655 WP_021209800.1 752908..754269(-) (radA) [Stutzerimonas stutzeri strain F2]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAATGTGGCTCGACCTTTCCCAAATGGGCAGGCCAATGCGGTGACTG
TGGCGCCTGGAACACGCTGGTCGAAACCGTGATCGACGGCGCCGCCCCCCCGTCCGGGCGCGCCGGCTGGGCGGGCGATC
AGGCCAACATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAGTGCCCCGTTTCTCGACGGCTTCCGGCGAGCTGGACCGC
GTACTCGGCGGCGGCCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAGTCGACCATCCTGCT
GCAGACGCTGTGCAACGTGGCTCGCCAGTTTCCCGCGCTTTACGTCACCGGCGAAGAATCGCAGCAGCAGGTGGCCATGC
GCGCGCGACGCCTGGACCTGCCGCAGGATCGGCTCAAGGTGATGACCGAAACCTGCATCGAATCGATCATTGCCACCGCC
CGCCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCGCCGGGCGG
GGTCGCTCAGGTACGCGAAAGCGCGGCATTGCTGGTGCGTTTCGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTCACCAAGGAAGGTGCGCTGGCCGGGCCGCGCGTGCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAGGGGGAA
TCGGATGGGCGCCTGCGCCTGCTGCGTGCGGTGAAGAACCGCTTCGGCGCCATCAACGAACTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTCAAGGAAGTCACCAACCCCTCGGCGATCTTCCTCACCCGCGCGCAGGAAGCGGTGCCTGGCAGCGTGG
TGATGGCCACCTGGGAAGGCACCCGGCCGATGCTCGTGGAGGTGCAGGCGCTGGTCGATACCAGCCACATGGCCAACCCG
CGGCGCGTCACCCTGGGCCTCGACCAGAACCGCCTGGCCATGCTGCTGGCCGTACTGCATCGCCACGGCGGGATCCCGAC
CTACGATCAGGACGTGTTCATCAACGTGGTTGGCGGGGTGAAAGTGCTCGAGACGGCCTCGGATCTGGCGCTCATGGCAG
CTGTGATATCCAGCCTGCGCAACCGGCCGCTGGATACCGATCTGCTGGTCTTCGGCGAGGTCGGCCTGTCCGGGGAAATC
CGCCCGGTCCCGAGCGGCCAGGAGCGGCTGAAGGAAGCCGCCAAGCATGGTTTCAAGCGGGCCATCGTGCCCAAGGGCAA
TGCACCCAAGGAAGCACCCGCCGGGTTGCAGGTCATCGCGGTGACGCGCCTCGAACAGGCGCTGGATGCGTTGTTCGAAT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-219)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8SQX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.344

100

0.483
  radA Streptococcus pneumoniae Rx1

46.608

100

0.47
  radA Streptococcus pneumoniae D39

46.608

100

0.47
  radA Streptococcus pneumoniae R6

46.608

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.608

100

0.47
  radA Streptococcus mitis NCTC 12261

46.389

100

0.468
  radA Streptococcus mitis SK321

46.578

100

0.466