Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H045_RS10975 Genome accession   NC_020209
Coordinates   2569428..2570063 (-) Length   211 a.a.
NCBI ID   WP_015372391.1    Uniprot ID   A0A0R2ZS79
Organism   Pseudomonas poae RE*1-1-14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2564428..2575063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H045_RS10940 (H045_11045) - 2564807..2565478 (+) 672 WP_003232168.1 Bax inhibitor-1/YccA family protein -
  H045_RS10945 (H045_11050) murB 2565542..2566561 (-) 1020 WP_015372388.1 UDP-N-acetylmuramate dehydrogenase -
  H045_RS10950 (H045_11055) - 2566558..2567022 (-) 465 WP_015372389.1 low molecular weight protein-tyrosine-phosphatase -
  H045_RS10955 (H045_11060) kdsB 2567022..2567786 (-) 765 WP_003232162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H045_RS10960 (H045_11065) - 2567783..2567968 (-) 186 WP_003174668.1 Trm112 family protein -
  H045_RS10965 (H045_11070) lpxK 2567993..2569003 (-) 1011 WP_015372390.1 tetraacyldisaccharide 4'-kinase -
  H045_RS10970 (H045_11075) - 2569003..2569431 (-) 429 WP_003232159.1 biopolymer transporter ExbD -
  H045_RS10975 (H045_11080) exbB 2569428..2570063 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H045_RS10980 (H045_11085) comA 2570173..2572398 (-) 2226 WP_236277538.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H045_RS10985 (H045_11090) - 2572534..2573049 (+) 516 WP_015372393.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22998.16 Da        Isoelectric Point: 6.8768

>NTDB_id=55794 H045_RS10975 WP_015372391.1 2569428..2570063(-) (exbB) [Pseudomonas poae RE*1-1-14]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=55794 H045_RS10975 WP_015372391.1 2569428..2570063(-) (exbB) [Pseudomonas poae RE*1-1-14]
GTGTGGGAATTGGTCAAATCCGGTGGTTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTCTGTGGACCCTGCGTGCCAGTCGGGTGACCCCCGAGCATCTGCTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAACAGAAGCTCAAGGAACTGCGCGCCAATTCGCCCTTGGGAGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAGCTGGAGCGCTACAT
CAATGCGCTCGGCACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGTTGGCCGGCGGTATCTCCAAAGCCTTGATCACCACCGCA
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGAGGACAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2ZS79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853

Multiple sequence alignment