Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KB235_RS07875 Genome accession   NZ_CP073101
Coordinates   1530946..1532643 (+) Length   565 a.a.
NCBI ID   WP_211779308.1    Uniprot ID   -
Organism   Exiguobacterium alkaliphilum strain B-3531D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525946..1537643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB235_RS07850 (KB235_07850) xseB 1526409..1526639 (+) 231 WP_034805943.1 exodeoxyribonuclease VII small subunit -
  KB235_RS07855 (KB235_07855) - 1526636..1527505 (+) 870 WP_211779306.1 polyprenyl synthetase family protein -
  KB235_RS07860 (KB235_07860) dxs 1527628..1529520 (+) 1893 WP_211779307.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KB235_RS07865 (KB235_07865) - 1529527..1530348 (+) 822 WP_034805945.1 TlyA family RNA methyltransferase -
  KB235_RS07870 (KB235_07870) ahrC 1530483..1530932 (+) 450 WP_024371524.1 transcriptional regulator AhrC/ArgR -
  KB235_RS07875 (KB235_07875) recN 1530946..1532643 (+) 1698 WP_211779308.1 DNA repair protein RecN Machinery gene
  KB235_RS07880 (KB235_07880) spo0A 1532644..1533375 (+) 732 WP_211779309.1 sporulation transcription factor Spo0A -
  KB235_RS07885 (KB235_07885) - 1534000..1534245 (-) 246 WP_034805950.1 DUF2627 family protein -
  KB235_RS07890 (KB235_07890) - 1534377..1536014 (+) 1638 WP_211779310.1 sigma 54-interacting transcriptional regulator -
  KB235_RS07895 (KB235_07895) yqiS 1536056..1537033 (+) 978 WP_276514430.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63568.11 Da        Isoelectric Point: 4.6043

>NTDB_id=557922 KB235_RS07875 WP_211779308.1 1530946..1532643(+) (recN) [Exiguobacterium alkaliphilum strain B-3531D]
MLAELSIKQFAIIDELNIDFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFIVEAGHPIFEAA
SQYGIEIEDGTVILRRDLHSSGKSVCRVNGKMMPLSTLREFGRQLVDIHGQHEHQHLMDAEYHLGILDSFAEGDVAPLLE
QYREAYKAWNDVASELKRLSQSEQELAQRMDLLAFQTNEIEAAALQVGEEQALTEERDELANFERIHQHVRLSYEAVADE
SRGLDQIGVAMREMEEASTLSTSLSPMAETISNAYFLLEDAKFQLRDQLDSLEFDPIRLDEIETRLALFQQLKRKYGATI
DEVIAYGEKVAEELKSMTNREEHLQELTEKLERLEVDVRESGLALSAARKRAATELEQAIHRELQELYMEKTRFEVRFKE
GAFRQDGLDQVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKSETDERTKTNVSVLDRQQRIDELGRMIAGPQMTELTKQHVEELLDMSLQLKRKF
IEGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=557922 KB235_RS07875 WP_211779308.1 1530946..1532643(+) (recN) [Exiguobacterium alkaliphilum strain B-3531D]
ATGTTAGCAGAACTATCGATCAAACAATTTGCGATCATCGACGAGTTGAACATCGACTTCAATCGAGGGATGACGGTCCT
TACCGGTGAGACCGGGGCGGGTAAATCGATCTTGCTCGACGCGATAGGACTGCTTGTTGGGGGGCGTGGCTCGAGCGAGT
TCGTCCGATACGGTCAAGACAAGGCGGAAATCGAAGGGTTGTTCATCGTGGAAGCCGGACATCCGATTTTCGAGGCGGCA
TCGCAATACGGAATTGAGATTGAGGACGGGACGGTCATCTTGCGTCGTGATTTACATAGTAGCGGCAAAAGTGTTTGTCG
CGTCAACGGTAAGATGATGCCACTCTCGACGCTTCGTGAGTTCGGACGACAACTCGTCGACATTCACGGGCAGCATGAAC
ATCAACATTTAATGGACGCTGAGTATCATCTCGGCATTTTAGATAGCTTTGCGGAAGGAGACGTCGCGCCGCTTCTCGAA
CAGTATCGGGAAGCGTATAAGGCTTGGAACGATGTCGCGAGCGAACTGAAACGGCTCAGTCAAAGCGAGCAGGAGCTGGC
GCAACGGATGGATTTGCTCGCCTTCCAGACGAATGAAATCGAGGCCGCCGCTCTGCAAGTCGGGGAAGAACAGGCGCTCA
CGGAAGAGCGGGACGAGCTCGCCAACTTCGAACGGATCCATCAGCACGTTCGGTTGTCATATGAGGCGGTCGCGGATGAG
TCGCGCGGCCTTGATCAAATTGGCGTCGCGATGCGGGAGATGGAAGAGGCGTCGACGCTCTCGACGTCACTTTCACCGAT
GGCCGAGACGATCTCAAACGCTTATTTCTTACTCGAGGATGCAAAGTTCCAACTTCGGGACCAGCTTGACTCGCTCGAGT
TCGATCCAATCCGTCTCGATGAGATTGAGACACGGCTCGCCTTGTTCCAACAATTGAAACGAAAATATGGCGCCACAATC
GATGAAGTCATCGCATACGGAGAAAAAGTGGCCGAAGAGTTAAAATCGATGACGAATCGGGAAGAACATTTGCAAGAACT
GACCGAAAAGCTCGAGCGACTCGAGGTCGATGTGCGTGAGAGCGGGCTTGCCTTGTCGGCAGCCCGGAAACGAGCTGCGA
CCGAGCTCGAGCAAGCGATTCATCGCGAACTGCAAGAGTTATACATGGAGAAGACCCGATTCGAAGTCCGGTTCAAAGAA
GGTGCGTTTAGACAAGACGGCCTCGACCAAGTCGAGTTTTACATGATGACAAACGTCGGAGAACCGTTCAAACCGCTCGC
GAAGGTCGCTTCTGGTGGAGAACTGTCACGGGTCATGCTCGCGCTGAAATCGATTTTCTCTCGGACGGTCGGCGTCGCCT
CGATCATCTTCGACGAAGTCGATACAGGTGTGTCGGGTCGCGTCGCGCAAGCGATGGGGGAGAAGATTTTCCGCCTCTCG
GTCGGCTCGCAAGTGCTCTGCATCACGCATTTAGCACAAGTCGCTGCCATGGCAGACCAACACCTCTACATTACGAAGTC
GGAGACGGACGAACGGACGAAAACGAACGTGAGCGTACTCGACCGTCAACAACGGATTGACGAGCTCGGACGCATGATTG
CCGGACCGCAGATGACAGAGTTGACGAAACAACATGTAGAGGAACTGCTCGACATGTCGTTGCAATTAAAACGGAAGTTC
ATTGAAGGGGTGTCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.101

100

0.549