Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   INT76_RS07925 Genome accession   NZ_CP073084
Coordinates   1554656..1556032 (+) Length   458 a.a.
NCBI ID   WP_212573049.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549656..1561032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS07895 (INT76_07895) - 1549779..1551014 (-) 1236 WP_212569911.1 NAD(P)H-dependent oxidoreductase -
  INT76_RS07900 (INT76_07900) - 1551027..1551632 (-) 606 WP_212569912.1 NADPH-dependent FMN reductase -
  INT76_RS07905 (INT76_07905) - 1551759..1552118 (+) 360 WP_172057127.1 YbaN family protein -
  INT76_RS07910 (INT76_07910) - 1552689..1553534 (+) 846 WP_212569913.1 helix-turn-helix transcriptional regulator -
  INT76_RS07915 (INT76_07915) - 1553679..1554122 (+) 444 WP_212569914.1 dUTP diphosphatase -
  INT76_RS07920 (INT76_07920) - 1554126..1554659 (+) 534 WP_212569915.1 histidine phosphatase family protein -
  INT76_RS07925 (INT76_07925) radA 1554656..1556032 (+) 1377 WP_212573049.1 DNA repair protein RadA Machinery gene
  INT76_RS07930 (INT76_07930) - 1556192..1556692 (+) 501 WP_212569916.1 carbonic anhydrase -
  INT76_RS07935 (INT76_07935) - 1556810..1557568 (+) 759 WP_212569917.1 TIGR00266 family protein -
  INT76_RS07940 (INT76_07940) - 1557867..1558313 (+) 447 WP_212569918.1 LytTR family DNA-binding domain-containing protein -
  INT76_RS07945 (INT76_07945) - 1558318..1558974 (+) 657 WP_212569919.1 hypothetical protein -
  INT76_RS07950 (INT76_07950) gltX 1559144..1560598 (+) 1455 WP_212569920.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50405.01 Da        Isoelectric Point: 6.3774

>NTDB_id=557860 INT76_RS07925 WP_212573049.1 1554656..1556032(+) (radA) [Streptococcus oriscaviae strain HKU75]
MRRTIIAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEIEVAEVKNERVSLTGEKTRPMKLNEVTSIQVARTKTNME
EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQAI
RTEIEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTHELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLY
FEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSQVFLEEQLDGATGSAIVVTMEGTRPILAEVQALVTPTM
FGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKDKPTNAQDCFVGEIGL
TGEIRRVNRIEQRIKEAAKLGFTKIYAPKNSLTDIDLPKEIEVIGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=557860 INT76_RS07925 WP_212573049.1 1554656..1556032(+) (radA) [Streptococcus oriscaviae strain HKU75]
ATAAGGAGAACCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGG
CCGCTGTCCCAATTGTGGAGCTTGGTCTTCTTTTGTGGAGGAAATCGAGGTAGCCGAAGTCAAGAACGAGCGGGTCAGCC
TGACTGGTGAGAAGACCCGACCCATGAAACTTAATGAAGTGACCTCTATCCAAGTGGCCAGAACCAAGACCAACATGGAA
GAGTTTAACCGCGTCCTGGGTGGCGGTGTGGTGCCGGGCAGCCTAGTCCTGATTGGGGGAGACCCAGGGATTGGTAAGTC
CACCCTGCTCTTACAGGTTTCCACCCAACTCTCCACCATCGGCACCGTTCTCTACGTATCAGGAGAAGAGTCTGCCCAGC
AGATTAAGCTACGGGCCGAGCGCTTGGGCGACATCGACAGCGAGTTTTATCTCTATGCCGAGACCAATATGCAGGCCATT
CGGACCGAAATCGAGAAAATCAAGCCTGACTTTCTCATCATCGACTCCATCCAGACTATTATGAGCCCCGATATTTCCAG
TGTGCAAGGCTCTGTCAGCCAGGTCCGCGAAGTCACCCACGAGCTCATGCAGCTGGCCAAGACCAACAATATCGCCACGT
TCATCGTGGGGCACATGACTAAGGAGGGCACCCTGGCAGGACCGCGGACCCTGGAGCACATGGTGGATACCGTGCTCTAT
TTTGAGGGGGAGCGCCAGCACACCTTCCGCATCCTGCGGGCCGTCAAAAACCGCTTTGGCTCCACCAATGAAATCGGTAT
TTTTGAGATGCAGTCCCAAGGCTTGGTCGAAGTCCTCAACCCTAGCCAGGTCTTTCTGGAAGAGCAGCTGGACGGGGCGA
CAGGCTCTGCTATTGTCGTGACCATGGAGGGCACCAGGCCTATCTTGGCAGAGGTCCAGGCCTTGGTTACCCCAACCATG
TTTGGCAATGCCAAGCGGACGACGACGGGCTTGGATTTTAACCGTGCCAGCCTCATTATGGCCGTTTTGGAAAAACGAGC
TGGCTTGCTCCTCCAAAATCAGGATGCCTACCTCAAGTCAGCAGGCGGTGTCCGTCTGGATGAACCCGCCATTGATTTGG
CCGTGGCCGTGGCCATTGCCTCCAGCTACAAGGACAAGCCAACCAATGCCCAAGATTGCTTCGTCGGCGAAATCGGTCTG
ACTGGCGAAATTCGTAGGGTCAACCGCATCGAGCAGCGGATAAAAGAAGCTGCTAAACTAGGCTTCACCAAGATCTACGC
ACCTAAAAATTCCTTGACGGATATTGACTTGCCGAAAGAAATTGAGGTTATCGGCGTCACTACCATCGGTGAAGTGCTGC
AAAAAGTATTTAAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)

AAA domain (AAA_25)

(68-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.929

98.69

0.897
  radA Streptococcus pneumoniae D39

90.929

98.69

0.897
  radA Streptococcus pneumoniae R6

90.929

98.69

0.897
  radA Streptococcus pneumoniae TIGR4

90.929

98.69

0.897
  radA Streptococcus mitis NCTC 12261

90.929

98.69

0.897
  radA Streptococcus mitis SK321

90.487

98.69

0.893
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

98.908

0.616