Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KCG37_RS24030 Genome accession   NZ_CP073082
Coordinates   5198543..5199100 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5193543..5204100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG37_RS24010 (KCG37_24010) pilR 5194819..5196156 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  KCG37_RS24015 (KCG37_24015) thiO 5196202..5197296 (-) 1095 WP_003123395.1 glycine oxidase ThiO -
  KCG37_RS24020 (KCG37_24020) - 5197431..5197940 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  KCG37_RS24025 (KCG37_24025) - 5198046..5198552 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  KCG37_RS24030 (KCG37_24030) pilV 5198543..5199100 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  KCG37_RS24035 (KCG37_24035) pilW 5199097..5199921 (+) 825 WP_003123396.1 type 4a pilus minor pilin PilW -
  KCG37_RS24040 (KCG37_24040) pilX 5199918..5200505 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  KCG37_RS24045 (KCG37_24045) pilY1 5200517..5204008 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=557809 KCG37_RS24030 WP_003119423.1 5198543..5199100(+) (pilV) [Pseudomonas aeruginosa strain WTJH17]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=557809 KCG37_RS24030 WP_003119423.1 5198543..5199100(+) (pilV) [Pseudomonas aeruginosa strain WTJH17]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995