Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1P14_RS15415 Genome accession   NZ_CP091029
Coordinates   3085527..3086156 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC384     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3080527..3091156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P14_RS15400 helD 3080769..3082823 (-) 2055 WP_000420536.1 DNA helicase IV -
  L1P14_RS15405 yccF 3082946..3083392 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1P14_RS15410 yccS 3083402..3085564 (+) 2163 WP_000875015.1 YccS family putative transporter -
  L1P14_RS15415 sxy/tfoX 3085527..3086156 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1P14_RS15420 sulA 3086375..3086884 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1P14_RS15425 ompA 3087241..3088293 (+) 1053 WP_000750419.1 porin OmpA -
  L1P14_RS15430 matP 3088368..3088820 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  L1P14_RS15435 ycbZ 3089006..3090766 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=557800 L1P14_RS15415 WP_000839153.1 3085527..3086156(-) (sxy/tfoX) [Escherichia coli strain STEC384]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=557800 L1P14_RS15415 WP_000839153.1 3085527..3086156(-) (sxy/tfoX) [Escherichia coli strain STEC384]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1